LOCUS VTR94921.1 590 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_2497 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2: MORN_2: MORN_2: MORN_2 protein.
ACCESSION LR593886-4222
PROTEIN_ID VTR94921.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_27930"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.537 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=2e-50 ;
Q/S_length_ratio=0.535"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.427 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=5e-46 ;
Q/S_length_ratio=1.392"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.325 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=4e-42 ;
Q/S_length_ratio=0.481"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.315 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=2e-41 ;
Q/S_length_ratio=1.054"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.317 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=1e-40 ;
Q/S_length_ratio=1.850"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.346 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=3e-39 ;
Q/S_length_ratio=0.961"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.364 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=9e-39 ;
Q/S_length_ratio=1.224"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DHB8|L0DHB8_SINAD ;
ALN/Q_length_ratio=0.441 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3834 PE=4 SV=1 ; EVALUE=2e-38 ;
Q/S_length_ratio=1.065"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0D7L2|L0D7L2_SINAD ;
ALN/Q_length_ratio=0.458 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0185 PE=4 SV=1 ; EVALUE=5e-38 ;
Q/S_length_ratio=1.178"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DQA3|L0DQA3_SINAD ;
ALN/Q_length_ratio=0.368 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6979 PE=4 SV=1 ; EVALUE=1e-37 ;
Q/S_length_ratio=1.326"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|A0A090KPX2|A0A090KPX2_9BACT ;
ALN/Q_length_ratio=0.305 ; DESCRIPTION=Uncultured
bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1 ; EVALUE=2e-37 ;
Q/S_length_ratio=0.509"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.478 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=2e-37 ;
Q/S_length_ratio=0.661"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DQ81|L0DQ81_SINAD ;
ALN/Q_length_ratio=0.473 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7511 PE=4 SV=1 ; EVALUE=2e-37 ;
Q/S_length_ratio=0.683"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DHG5|L0DHG5_SINAD ;
ALN/Q_length_ratio=0.375 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3888 PE=4 SV=1 ; EVALUE=3e-37 ;
Q/S_length_ratio=0.840"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DR85|L0DR85_SINAD ;
ALN/Q_length_ratio=0.388 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7453 PE=4 SV=1 ; EVALUE=3e-36 ;
Q/S_length_ratio=0.988"
/note="Pfam_scan:hit_1 (43..113);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:63; HMM_Length:71;
EVALUE:5.1e-09; BITSCORE: 35.6"
/note="Pfam_scan:hit_2 (136..189);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:53; HMM_Length:54;
EVALUE:3.4e-09; BITSCORE: 36.0"
/note="Pfam_scan:hit_3 (492..513); Pfam:PF07661.8:MORN_2;
Pfam_type:Repeat;HMM_aln_Length:20; HMM_Length:22;
EVALUE:0.4; BITSCORE: 10.8"
/note="Pfam_scan:hit_4 (516..537); Pfam:PF07661.8:MORN_2;
Pfam_type:Repeat;HMM_aln_Length:20; HMM_Length:22;
EVALUE:0.0017; BITSCORE: 18.1"
/note="Pfam_scan:hit_5 (540..561); Pfam:PF07661.8:MORN_2;
Pfam_type:Repeat;HMM_aln_Length:20; HMM_Length:22;
EVALUE:1.1; BITSCORE: 9.5"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MATRAADPLL QSVRALVAGR GESDQELLDR FVRQHDEAAF ATLVERHGPM VLGVCRRGLR
61 DEHAAEDTFQ ATFLVLARNA GSIHERRALS SWLHGVALRL VRRARVTFAR AQRDKARIAP
121 EAPREPAVEA SWSEVRQILD DELKRLPENY RLPLVLCALE GRSREEAAAE MGCTPSQLKG
181 LLERGRERLR ARLIRRGLAP SSIGALLLTE EALAVPVPPL LAIATRRITR GLSATTHPTD
241 CELPLPVRSL IARGLSMIGA KRLGLVLVFA VVATAVGLSG FDRPETAPAP HAVADRSQKS
301 APATNKRTDL LDDEAAVAAH IKALHDPDST TREKAATALR RIVAKYPSGT VYLPSKDGGE
361 AEWKAKVDRI EPGSDKSEML KILPPLTPGD SGGGLVEGDS HYGSYRLDYH WIVRICYRDT
421 GKMIRRPELM KNALRVHVAP PKDFTGTWTT WHINGQKSYD YQYKNGKSDG VFTSYHDNGA
481 KNHEQHYTAD VAHGTGTGWF PDGKVNYTIQ YRNGKLHGTW THWYANGNKH SEANYADGEY
541 HGRQTNWHEN GQLGSVTDYK NGVKHGVEAS WNENGIPHYD RLYLNGKIVN
//