LOCUS VTR94906.1 561 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna-binding protein : 60 kDa SS-A/Ro
ribonucleoprotein OS=Beggiatoa sp. PS GN=rop-1 PE=4 SV=
1: TROVE protein.
ACCESSION LR593886-4207
PROTEIN_ID VTR94906.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_28080"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|B9XDQ9|B9XDQ9_PEDPL ;
ALN/Q_length_ratio=1.004 ; DESCRIPTION=TROVE domain
protein OS=Pedosphaera parvula (strain Ellin514)
GN=Cflav_PD6481 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.996"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|A7C186|A7C186_9GAMM ;
ALN/Q_length_ratio=0.936 ; DESCRIPTION=60 kDa SS-A/Ro
ribonucleoprotein OS=Beggiatoa sp. PS GN=rop-1 PE=4 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=1.051"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|A0A068NYR1|A0A068NYR1_9BACT ;
ALN/Q_length_ratio=0.934 ; DESCRIPTION=60 kDa SS-A/Ro
ribonucleoprotein OS=Fimbriimonas ginsengisoli Gsoil 348
GN=OP10G_3896 PE=4 SV=1 ; EVALUE=1e-178 ;
Q/S_length_ratio=1.067"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A0A017T8W8|A0A017T8W8_9DELT ;
ALN/Q_length_ratio=0.984 ; DESCRIPTION=Uncharacterized
protein OS=Chondromyces apiculatus DSM 436 GN=CAP_3324
PE=4 SV=1 ; EVALUE=1e-178 ; Q/S_length_ratio=0.984"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|S4XPY0|S4XPY0_SORCE ;
ALN/Q_length_ratio=0.988 ; DESCRIPTION=RNA-binding protein
OS=Sorangium cellulosum So0157-2 GN=SCE1572_33685 PE=4
SV=1 ; EVALUE=1e-175 ; Q/S_length_ratio=1.004"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|B8IKH3|B8IKH3_METNO ;
ALN/Q_length_ratio=0.939 ; DESCRIPTION=TROVE domain
protein OS=Methylobacterium nodulans (strain ORS2060 / LMG
21967) GN=Mnod_7219 PE=4 SV=1 ; EVALUE=1e-172 ;
Q/S_length_ratio=1.058"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|I1FTC4|I1FTC4_AMPQE ;
ALN/Q_length_ratio=0.945 ; DESCRIPTION=Uncharacterized
protein OS=Amphimedon queenslandica GN=LOC100634688 PE=4
SV=1 ; EVALUE=1e-169 ; Q/S_length_ratio=1.035"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|A0A089NPW5|A0A089NPW5_9RHIZ ;
ALN/Q_length_ratio=0.916 ; DESCRIPTION=TROVE
domain-containing protein OS=Methylobacterium oryzae
CBMB20 GN=MOC_2206 PE=4 SV=1 ; EVALUE=1e-167 ;
Q/S_length_ratio=1.083"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|A9G3H5|A9G3H5_SORC5 ;
ALN/Q_length_ratio=0.988 ; DESCRIPTION=Uncharacterized
protein OS=Sorangium cellulosum (strain So ce56)
GN=sce5600 PE=4 SV=1 ; EVALUE=1e-166 ;
Q/S_length_ratio=1.004"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|X5KMY4|X5KMY4_9MYCO ;
ALN/Q_length_ratio=0.988 ; DESCRIPTION=TROVE
domain-containing protein OS=Mycobacterium mageritense
GN=BN978_01176 PE=4 SV=1 ; EVALUE=1e-159 ;
Q/S_length_ratio=0.995"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|I6X2L4|I6X2L4_PROPF ;
ALN/Q_length_ratio=0.913 ; DESCRIPTION=60 kDa SS-A/Ro
ribonucleoprotein-like protein OS=Propionibacterium
propionicum (strain F0230a) GN=rsr PE=4 SV=1 ;
EVALUE=1e-157 ; Q/S_length_ratio=1.051"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|E2MXQ9|E2MXQ9_CORAY ;
ALN/Q_length_ratio=0.959 ; DESCRIPTION=TROVE domain
protein OS=Corynebacterium amycolatum SK46
GN=CORAM0001_1910 PE=4 SV=1 ; EVALUE=1e-156 ;
Q/S_length_ratio=1.031"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|B1LSC0|B1LSC0_METRJ ;
ALN/Q_length_ratio=0.934 ; DESCRIPTION=TROVE domain
protein OS=Methylobacterium radiotolerans (strain ATCC
27329 / DSM 1819 / JCM 2831) GN=Mrad2831_1806 PE=4 SV=1 ;
EVALUE=1e-155 ; Q/S_length_ratio=1.051"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L7VR73|L7VR73_9BACT ;
ALN/Q_length_ratio=0.971 ; DESCRIPTION=60 kDa SS-A/Ro
ribonucleoprotein-like protein OS=uncultured bacterium
A1Q1_fos_91 PE=4 SV=1 ; EVALUE=1e-155 ;
Q/S_length_ratio=1.026"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|J0MWE3|J0MWE3_9ACTO ;
ALN/Q_length_ratio=0.925 ; DESCRIPTION=60 kDa SS-A/Ro
ribonucleoprotein-like protein OS=Actinomyces massiliensis
F0489 GN=HMPREF1318_2237 PE=4 SV=1 ; EVALUE=1e-154 ;
Q/S_length_ratio=1.060"
/note="Pfam_scan:hit_1 (26..363); Pfam:PF05731.6:TROVE;
Pfam_type:Domain;HMM_aln_Length:384; HMM_Length:385;
EVALUE:6e-63; BITSCORE: 212.9"
/note="GO_domain:GO:0003723"
BEGIN
1 MTVRYTGHFA PRHTPQNEPI PGSTQVRNSA SGFSFAVDDW TRLDRFLVLG AEGGSYYADE
61 RQLTLQNAEA VRRCLEANGG RTVARIIEIS EAGRAPKNDP AVFALAMAAG MGSPGTRAQA
121 LAAVPRVCRI GTHLFQFVEG VEAFRGWGRA LRRAVGNWYT EKAPRDLAHQ LSKYQQRGGW
181 AHRDLLRLCH VKANEPSNSA LRWAVGKGEL PDTVDVNDPL TPIVGFEAAK RATDPAEVVR
241 LIREYTLPRE CVPTRWLNRM DVWDALLEHM PLGALVRNLA TTTRIGLLTP ESTAVDRVVA
301 ALADTERLRR SRLHPIAILA ALRTYASGRG VRGRGFWIPV QRVVDALDGA FHAAFGNAEP
361 TNKKWLLALD VSGSMGWSAI AGVPGLSARD GAAAMALVTA ATEPNHHVIG FTGCGFHVAG
421 TQAATFGAWS AYPNSGSGVE MLPIRPDQRL DDAIRVVDNL PMGPTDCALP MLYALERKLA
481 IDVFVVYTDS ETWHGNIHPI QALQRYREKT GIGAKLIVVG MVSNGFSIAD PDDAGMMDVV
541 GFDTAVPQLM SQFAVGDAPR S
//