LOCUS VTR94889.1 535 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna sigma 54 : RNA polymerase sigma-
54 factor OS=Singulisphaera acidiphila (strain ATCC BAA-
1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_1313 PE=
4 SV=1: Sigma54_AID: Sigma54_CBD: Sigma54_DBD protein.
ACCESSION LR593886-4190
PROTEIN_ID VTR94889.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_28250"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DA06|L0DA06_SINAD ;
ALN/Q_length_ratio=0.895 ; DESCRIPTION=RNA polymerase
sigma-54 factor OS=Singulisphaera acidiphila (strain ATCC
BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_1313
PE=4 SV=1 ; EVALUE=1e-143 ; Q/S_length_ratio=1.117"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|A3ZPF2|A3ZPF2_9PLAN ;
ALN/Q_length_ratio=0.925 ; DESCRIPTION=RNA polymerase
subunit OS=Blastopirellula marina DSM 3645
GN=DSM3645_28652 PE=4 SV=1 ; EVALUE=1e-136 ;
Q/S_length_ratio=1.074"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|E8R2R3|E8R2R3_ISOPI ;
ALN/Q_length_ratio=0.931 ; DESCRIPTION=RNA polymerase,
sigma 54 subunit, RpoN OS=Isosphaera pallida (strain ATCC
43644 / DSM 9630 / IS1B) GN=Isop_2995 PE=4 SV=1 ;
EVALUE=1e-132 ; Q/S_length_ratio=1.074"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|D5SRK8|D5SRK8_PLAL2 ;
ALN/Q_length_ratio=0.921 ; DESCRIPTION=RNA polymerase
sigma-54 factor, RpoN OS=Planctomyces limnophilus (strain
ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_0695 PE=4
SV=1 ; EVALUE=1e-131 ; Q/S_length_ratio=1.081"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|O69080|O69080_PLALI ;
ALN/Q_length_ratio=0.921 ; DESCRIPTION=RNA polymerase
subunit sigma-54 OS=Planctomyces limnophilus GN=rpoN PE=4
SV=1 ; EVALUE=1e-131 ; Q/S_length_ratio=1.081"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|D2R5L0|D2R5L0_PIRSD ;
ALN/Q_length_ratio=0.916 ; DESCRIPTION=RNA polymerase,
sigma 54 subunit, RpoN OS=Pirellula staleyi (strain ATCC
27377 / DSM 6068 / ICPB 4128) GN=Psta_2523 PE=4 SV=1 ;
EVALUE=1e-125 ; Q/S_length_ratio=1.083"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|F0SQA9|F0SQA9_PLABD ;
ALN/Q_length_ratio=0.908 ; DESCRIPTION=RNA polymerase,
sigma 54 subunit, RpoN/SigL OS=Planctomyces brasiliensis
(strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 /
IFAM 1448) GN=Plabr_4717 PE=4 SV=1 ; EVALUE=1e-123 ;
Q/S_length_ratio=1.092"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M5U8W4|M5U8W4_9PLAN ;
ALN/Q_length_ratio=0.927 ; DESCRIPTION=RNA polymerase,
sigma 54 subunit, RpoN OS=Rhodopirellula sallentina SM41
GN=RSSM_06125 PE=4 SV=1 ; EVALUE=1e-123 ;
Q/S_length_ratio=1.076"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M5RM32|M5RM32_9PLAN ;
ALN/Q_length_ratio=0.899 ; DESCRIPTION=RNA polymerase,
sigma 54 subunit, RpoN OS=Rhodopirellula maiorica SM1
GN=RMSM_02714 PE=4 SV=1 ; EVALUE=1e-122 ;
Q/S_length_ratio=1.099"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|A6CFS8|A6CFS8_9PLAN ;
ALN/Q_length_ratio=0.923 ; DESCRIPTION=RNA polymerase
subunit sigma-54 OS=Planctomyces maris DSM 8797
GN=PM8797T_30509 PE=4 SV=1 ; EVALUE=1e-120 ;
Q/S_length_ratio=1.079"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|Q7UQ69|Q7UQ69_RHOBA ;
ALN/Q_length_ratio=0.931 ; DESCRIPTION=RNA polymerase
subunit sigma-54 OS=Rhodopirellula baltica (strain SH1)
GN=RB6491 PE=4 SV=1 ; EVALUE=1e-119 ;
Q/S_length_ratio=1.017"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|M2AKH4|M2AKH4_9PLAN ;
ALN/Q_length_ratio=0.931 ; DESCRIPTION=RNA polymerase,
sigma 54/sigma 60 factor OS=Rhodopirellula europaea 6C
GN=RE6C_01691 PE=4 SV=1 ; EVALUE=1e-119 ;
Q/S_length_ratio=1.017"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|K5CAD2|K5CAD2_RHOBT ;
ALN/Q_length_ratio=0.893 ; DESCRIPTION=RNA polymerase,
sigma 54 subunit, RpoN OS=Rhodopirellula baltica SH28
GN=RBSH_04541 PE=4 SV=1 ; EVALUE=1e-115 ;
Q/S_length_ratio=1.119"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L7CD26|L7CD26_RHOBT ;
ALN/Q_length_ratio=0.893 ; DESCRIPTION=RNA polymerase,
sigma 54 subunit, RpoN OS=Rhodopirellula baltica SWK14
GN=RBSWK_04266 PE=4 SV=1 ; EVALUE=1e-115 ;
Q/S_length_ratio=1.119"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|M5T1A2|M5T1A2_9PLAN ;
ALN/Q_length_ratio=0.890 ; DESCRIPTION=RNA polymerase,
sigma 54 subunit, RpoN OS=Rhodopirellula sp. SWK7
GN=RRSWK_04526 PE=4 SV=1 ; EVALUE=1e-115 ;
Q/S_length_ratio=1.122"
/note="Pfam_scan:hit_1 (8..56);
Pfam:PF00309.15:Sigma54_AID;
Pfam_type:Family;HMM_aln_Length:47; HMM_Length:49;
EVALUE:3.4e-14; BITSCORE: 52.0"
/note="Pfam_scan:hit_2 (200..354);
Pfam:PF04963.8:Sigma54_CBD;
Pfam_type:Domain;HMM_aln_Length:139; HMM_Length:194;
EVALUE:1.1e-37; BITSCORE: 129.3"
/note="Pfam_scan:hit_3 (367..527);
Pfam:PF04552.8:Sigma54_DBD;
Pfam_type:Domain;HMM_aln_Length:157; HMM_Length:160;
EVALUE:1.6e-59; BITSCORE: 199.9"
/note="GO_domain:GO:0044281"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0016779"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005730"
/note="Enzyme_Code:EC:2.7.7.6"
BEGIN
1 MSGLGMRMDI RVRQDLRQVL APRMIQSMEI LQLSITDLQT KIDEALQENP FLELKEKLGE
61 VDEVAPDFNP DAPLKHDETG DLEFNRLEEL NRDWDDHFNE EHRGSRASME EEGDRKLEAM
121 ANMPDRAPSL QDYLADQIGE LELEEDERRL ARHICSFVDR TGYLGARLKV RKGKDREELD
181 EEDKDKPKKK KADDENDEEL YSDVFRTVPL SEIASLYDAT VTAEDVEDTL VHVVQKLDPP
241 GVAARDLKEC LLLQVPPDAP MAEAMRVIIR DHLEDVGANR IPVIQKATRY ELATIQDTIA
301 AIQHLDPKPG LKFSDSGTRY VMPDVVVERA DDSDYTVRLT DEWVPRIRVS KRIVDLCKRQ
361 DLDESVKEEL RKKLQSADWL VKAVEQRRNT LLKVTKAIID HQRAFLDYGP EHIHPLKMQQ
421 IADQVKVHVT TVSRAVDDKW VQTPRGVFPL KRFFGGGKAN NQTGEDVAYE VMKQKLLELV
481 SNEDKANPLS DEELVTLLKA DGYPVARRTV TKYRKMLNIP SSRQRKDWSL SPTTT
//