LOCUS VTR94839.1 179 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna sigma-24 ecf subfamily : RNA polymerase
sigma-70 domain protein OS=Rhodopirellula sp. SWK7 GN=
RRSWK_06130 PE=4 SV=1: Sigma70_r2: Sigma70_r4_2 protein.
ACCESSION LR593886-4140
PROTEIN_ID VTR94839.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_28750"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|M5SX12|M5SX12_9PLAN ;
ALN/Q_length_ratio=0.922 ; DESCRIPTION=RNA polymerase
sigma-70 domain protein OS=Rhodopirellula sp. SWK7
GN=RRSWK_06130 PE=4 SV=1 ; EVALUE=2e-28 ;
Q/S_length_ratio=1.017"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|M5T2S0|M5T2S0_9PLAN ;
ALN/Q_length_ratio=0.877 ; DESCRIPTION=RNA polymerase
sigma-70 domain protein OS=Rhodopirellula sp. SWK7
GN=RRSWK_04117 PE=4 SV=1 ; EVALUE=5e-26 ;
Q/S_length_ratio=1.035"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|F0SIW0|F0SIW0_PLABD ;
ALN/Q_length_ratio=0.877 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Planctomyces
brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /
NBRC 103401 / IFAM 1448) GN=Plabr_4236 PE=4 SV=1 ;
EVALUE=9e-26 ; Q/S_length_ratio=0.829"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|M5U6J5|M5U6J5_9PLAN ;
ALN/Q_length_ratio=0.877 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Rhodopirellula
sallentina SM41 GN=RSSM_01470 PE=4 SV=1 ; EVALUE=9e-25 ;
Q/S_length_ratio=1.041"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|M5U6T0|M5U6T0_9PLAN ;
ALN/Q_length_ratio=0.939 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Rhodopirellula
sallentina SM41 GN=RSSM_01405 PE=4 SV=1 ; EVALUE=2e-24 ;
Q/S_length_ratio=0.918"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|A3ZU31|A3ZU31_9PLAN ;
ALN/Q_length_ratio=0.955 ; DESCRIPTION=Probable ECF sigma
factor (Sigma-70 family protein) OS=Blastopirellula marina
DSM 3645 GN=DSM3645_05715 PE=4 SV=1 ; EVALUE=2e-16 ;
Q/S_length_ratio=0.973"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|F2AVZ0|F2AVZ0_RHOBT ;
ALN/Q_length_ratio=0.916 ; DESCRIPTION=ECF family RNA
polymerase sigma factor OS=Rhodopirellula baltica WH47
GN=RBWH47_04234 PE=4 SV=1 ; EVALUE=1e-15 ;
Q/S_length_ratio=1.006"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|Q7UQ50|Q7UQ50_RHOBA ;
ALN/Q_length_ratio=0.922 ; DESCRIPTION=Probable ECF sigma
factor (Sigma-70 family) OS=Rhodopirellula baltica (strain
SH1) GN=RB6517 PE=4 SV=1 ; EVALUE=2e-15 ;
Q/S_length_ratio=1.006"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|K5D108|K5D108_RHOBT ;
ALN/Q_length_ratio=0.916 ; DESCRIPTION=ECF family RNA
polymerase sigma factor OS=Rhodopirellula baltica SH28
GN=RBSH_04528 PE=4 SV=1 ; EVALUE=4e-15 ;
Q/S_length_ratio=0.873"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L7CCK6|L7CCK6_RHOBT ;
ALN/Q_length_ratio=0.916 ; DESCRIPTION=ECF family RNA
polymerase sigma factor OS=Rhodopirellula baltica SWK14
GN=RBSWK_04254 PE=4 SV=1 ; EVALUE=4e-15 ;
Q/S_length_ratio=1.006"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M5U7P9|M5U7P9_9PLAN ;
ALN/Q_length_ratio=0.838 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Rhodopirellula sallentina SM41
GN=RSSM_01276 PE=4 SV=1 ; EVALUE=8e-15 ;
Q/S_length_ratio=1.105"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|M5T9Q2|M5T9Q2_9PLAN ;
ALN/Q_length_ratio=0.888 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like, Rhodopirellula baltica
OS=Rhodopirellula sp. SWK7 GN=RRSWK_05231 PE=4 SV=1 ;
EVALUE=8e-15 ; Q/S_length_ratio=1.017"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|A3ZSG4|A3ZSG4_9PLAN ;
ALN/Q_length_ratio=0.922 ; DESCRIPTION=Probable
extracytoplasmic function alternative sigma factor
OS=Blastopirellula marina DSM 3645 GN=DSM3645_14800 PE=4
SV=1 ; EVALUE=3e-14 ; Q/S_length_ratio=0.947"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|A6DJR3|A6DJR3_9BACT ;
ALN/Q_length_ratio=0.911 ; DESCRIPTION=Probable
extracytoplasmic function alternative sigma factor
OS=Lentisphaera araneosa HTCC2155 GN=LNTAR_12311 PE=4 SV=1
; EVALUE=8e-14 ; Q/S_length_ratio=1.053"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|M5TS45|M5TS45_9PLAN ;
ALN/Q_length_ratio=0.899 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like, Rhodopirellula baltica
OS=Rhodopirellula sallentina SM41 GN=RSSM_06613 PE=4 SV=1
; EVALUE=1e-12 ; Q/S_length_ratio=1.000"
/note="Pfam_scan:hit_1 (11..79);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:63; HMM_Length:71;
EVALUE:9.6e-08; BITSCORE: 31.5"
/note="Pfam_scan:hit_2 (105..161);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:47; HMM_Length:54;
EVALUE:6.7e-07; BITSCORE: 28.6"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MTLEPDGIVQ ILLRERLRVT ALAATVTRDV HAADDIFQQV VLAALESRAQ FHDTDHVLAW
61 ALRAARHRAV DLARSRRLHS LPDDVLDHLE ARWSDSKDVA ISDRSEALHR CLGKLTASAQ
121 ELLRMRYAEG LTAVTVAKRL HRTPDAVYQN LSRIHRSLRE CVEGELGGRE PSTVREVPS
//