LOCUS VTR94767.1 594 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_6419 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2 protein.
ACCESSION LR593886-4068
PROTEIN_ID VTR94767.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_29470"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.460 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=2e-44 ;
Q/S_length_ratio=0.967"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.431 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=8e-42 ;
Q/S_length_ratio=1.401"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.495 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=9e-41 ;
Q/S_length_ratio=1.347"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DPR4|L0DPR4_SINAD ;
ALN/Q_length_ratio=0.473 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6601 PE=4 SV=1 ; EVALUE=2e-40 ;
Q/S_length_ratio=0.980"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DT29|L0DT29_SINAD ;
ALN/Q_length_ratio=0.411 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7487 PE=4 SV=1 ; EVALUE=1e-38 ;
Q/S_length_ratio=1.193"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.409 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=2e-38 ;
Q/S_length_ratio=1.038"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DR85|L0DR85_SINAD ;
ALN/Q_length_ratio=0.448 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7453 PE=4 SV=1 ; EVALUE=2e-37 ;
Q/S_length_ratio=0.995"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.480 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=3e-37 ;
Q/S_length_ratio=0.665"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.431 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=4e-37 ;
Q/S_length_ratio=1.061"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.431 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=2e-36 ;
Q/S_length_ratio=0.539"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.308 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=5e-35 ;
Q/S_length_ratio=0.484"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.458 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=1e-34 ;
Q/S_length_ratio=1.862"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.397 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=3e-34 ;
Q/S_length_ratio=1.232"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0D7L2|L0D7L2_SINAD ;
ALN/Q_length_ratio=0.527 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0185 PE=4 SV=1 ; EVALUE=4e-34 ;
Q/S_length_ratio=1.186"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DQP0|L0DQP0_SINAD ;
ALN/Q_length_ratio=0.471 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7241 PE=4 SV=1 ; EVALUE=5e-34 ;
Q/S_length_ratio=1.076"
/note="Pfam_scan:hit_1 (42..110);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:70; HMM_Length:71;
EVALUE:4.4e-12; BITSCORE: 45.4"
/note="Pfam_scan:hit_2 (132..185);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:50; HMM_Length:54;
EVALUE:4.1e-09; BITSCORE: 35.7"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MSEKSLVHLF PDLARYRYEG VPDDALVGRY VHERDEGAFT ELVQRHGAMV LAVCRRVLRN
61 SADADDVFQA TFMVLARKAD AIRPAGAVGP WLHGVAFRTA REALRRAARR RAKESRVVPR
121 EPIPEPVAPD VRHVLDAELD RLPKAFARVL VLCDMEGRTR RDVAALLDLP EGTVASRLAR
181 AREMLAARLT RRGVGLSVGA LATVLSADPG AAVPPELLAG TVRSALTFGA GRTVEAVSPS
241 VLELTNTVLR AHSTRLKFLI VGLVVAVAGV GGWAAMSETR PRQPDPERTS SAISDVAKQP
301 QPVPVLNPAA ALRTQLAGVW KVDAGVRDGR PLTDWEKNGF RFDFNLSGAL TIYRGLIQDQ
361 RAFTWTIEPN AAPPTIVLTP PNANAVGAVR VAFELREGSL TLSWDDPQTG RGNPRAARGV
421 SSRLTLSKVA SASSSTELVV APAAQNVVGT RLAGSWEADG ALNGRLGLAA EPDPDEPPSK
481 TTLTFTSDST VARDVPAAYR ELFAEKRVYL SGVMAVARGS RKPVSYRFLL IEHAGNALLV
541 YFVPHLRDEW NCEEAATVML VPGTEREKDL LFLSAFENAP HAPVGGFRRV EVKK
//