LOCUS VTR94765.1 137 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna-binding protein : RNP-1 like RNA-
binding protein OS=Planctomyces limnophilus (strain ATCC
43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_1587 PE=4
SV=1: RRM_1 protein.
ACCESSION LR593886-4066
PROTEIN_ID VTR94765.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_29490"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|D5SWS0|D5SWS0_PLAL2 ;
ALN/Q_length_ratio=0.591 ; DESCRIPTION=RNP-1 like
RNA-binding protein OS=Planctomyces limnophilus (strain
ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_1587 PE=4
SV=1 ; EVALUE=5e-36 ; Q/S_length_ratio=0.938"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|E8R1A5|E8R1A5_ISOPI ;
ALN/Q_length_ratio=0.613 ; DESCRIPTION=RNP-1 like
RNA-binding protein OS=Isosphaera pallida (strain ATCC
43644 / DSM 9630 / IS1B) GN=Isop_0720 PE=4 SV=1 ;
EVALUE=1e-31 ; Q/S_length_ratio=1.062"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DII4|L0DII4_SINAD ;
ALN/Q_length_ratio=0.620 ; DESCRIPTION=RRM
domain-containing RNA-binding protein OS=Singulisphaera
acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454
/ MOB10) GN=Sinac_5050 PE=4 SV=1 ; EVALUE=2e-28 ;
Q/S_length_ratio=1.030"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DDX1|L0DDX1_SINAD ;
ALN/Q_length_ratio=0.591 ; DESCRIPTION=RRM
domain-containing RNA-binding protein OS=Singulisphaera
acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454
/ MOB10) GN=Sinac_3164 PE=4 SV=1 ; EVALUE=4e-27 ;
Q/S_length_ratio=0.958"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0D826|L0D826_SINAD ;
ALN/Q_length_ratio=0.599 ; DESCRIPTION=RRM
domain-containing RNA-binding protein OS=Singulisphaera
acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454
/ MOB10) GN=Sinac_0549 PE=4 SV=1 ; EVALUE=2e-25 ;
Q/S_length_ratio=1.151"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|E6V2D5|E6V2D5_VARPE ;
ALN/Q_length_ratio=0.613 ; DESCRIPTION=RNP-1 like
RNA-binding protein OS=Variovorax paradoxus (strain EPS)
GN=Varpa_0344 PE=4 SV=1 ; EVALUE=5e-24 ;
Q/S_length_ratio=0.993"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|J3CJC3|J3CJC3_9BURK ;
ALN/Q_length_ratio=0.613 ; DESCRIPTION=RRM
domain-containing RNA-binding protein OS=Variovorax sp.
CF313 GN=PMI12_03807 PE=4 SV=1 ; EVALUE=5e-24 ;
Q/S_length_ratio=1.022"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|C5CY78|C5CY78_VARPS ;
ALN/Q_length_ratio=0.613 ; DESCRIPTION=RNP-1 like
RNA-binding protein OS=Variovorax paradoxus (strain S110)
GN=Vapar_0319 PE=4 SV=1 ; EVALUE=6e-24 ;
Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|T1X588|T1X588_VARPD ;
ALN/Q_length_ratio=0.613 ; DESCRIPTION=RNA recognition
motif-containing protein OS=Variovorax paradoxus B4
GN=VAPA_1c03840 PE=4 SV=1 ; EVALUE=6e-24 ;
Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|A1VNL4|A1VNL4_POLNA ;
ALN/Q_length_ratio=0.599 ; DESCRIPTION=RNP-1 like
RNA-binding protein OS=Polaromonas naphthalenivorans
(strain CJ2) GN=Pnap_1932 PE=4 SV=1 ; EVALUE=1e-23 ;
Q/S_length_ratio=1.038"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|A0A0A1VD63|A0A0A1VD63_9BURK ;
ALN/Q_length_ratio=0.599 ; DESCRIPTION=RNA-binding protein
OS=Acidovorax sp. MR-S7 GN=AVS7_00957 PE=4 SV=1 ;
EVALUE=1e-23 ; Q/S_length_ratio=0.919"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|A0A068YHH1|A0A068YHH1_9BURK ;
ALN/Q_length_ratio=0.599 ; DESCRIPTION=RNA-binding protein
OS=Polaromonas sp. CG9_12 PE=4 SV=1 ; EVALUE=2e-23 ;
Q/S_length_ratio=0.945"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|A2SMG9|A2SMG9_METPP ;
ALN/Q_length_ratio=0.599 ; DESCRIPTION=RNA-binding region
RNP-1 OS=Methylibium petroleiphilum (strain PM1)
GN=Mpe_A3805 PE=4 SV=1 ; EVALUE=3e-23 ;
Q/S_length_ratio=0.846"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|A0A068YK74|A0A068YK74_9BURK ;
ALN/Q_length_ratio=0.599 ; DESCRIPTION=RNA-binding protein
OS=Polaromonas sp. CG9_12 PE=4 SV=1 ; EVALUE=3e-23 ;
Q/S_length_ratio=1.022"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|A1VW19|A1VW19_POLNA ;
ALN/Q_length_ratio=0.599 ; DESCRIPTION=RNP-1 like
RNA-binding protein OS=Polaromonas naphthalenivorans
(strain CJ2) GN=Pnap_4579 PE=4 SV=1 ; EVALUE=5e-23 ;
Q/S_length_ratio=0.926"
/note="Pfam_scan:hit_1 (6..74); Pfam:PF00076.17:RRM_1;
Pfam_type:Domain;HMM_aln_Length:68; HMM_Length:70;
EVALUE:2.2e-22; BITSCORE: 78.4"
/note="GO_domain:GO:0003674"
BEGIN
1 MASKNLYVGN LPFTTTQADL EQLFGQYGTV TKVQVISDRE TGRSRGFGFV EMSSGAEEAV
61 AAMNGAEYQG RRLTVNEAKP REERPRGGGG GGGYGGGGGG YGGGGGGGRR GGGGGGYGGG
121 GGGGYGGGYG GGRGDRY
//