LOCUS VTR94762.1 620 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : Uncultured bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1: Sigma70_r2: Sigma70_r4_2:
WD40: WD40 protein.
ACCESSION LR593886-4063
PROTEIN_ID VTR94762.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_29520"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|A0A090KPX2|A0A090KPX2_9BACT ;
ALN/Q_length_ratio=1.102 ; DESCRIPTION=Uncultured
bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1 ; EVALUE=1e-58 ;
Q/S_length_ratio=0.535"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DT29|L0DT29_SINAD ;
ALN/Q_length_ratio=0.413 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7487 PE=4 SV=1 ; EVALUE=2e-42 ;
Q/S_length_ratio=1.245"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.471 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=2e-42 ;
Q/S_length_ratio=1.406"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DIV6|L0DIV6_SINAD ;
ALN/Q_length_ratio=0.256 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4570 PE=4 SV=1 ; EVALUE=3e-42 ;
Q/S_length_ratio=1.235"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.415 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=1e-40 ;
Q/S_length_ratio=1.010"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.405 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=2e-39 ;
Q/S_length_ratio=1.462"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.445 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=5e-38 ;
Q/S_length_ratio=0.694"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.416 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=2e-37 ;
Q/S_length_ratio=1.107"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.447 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=2e-36 ;
Q/S_length_ratio=1.084"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.390 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=7e-36 ;
Q/S_length_ratio=1.286"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|X6LDC5|X6LDC5_RETFI ;
ALN/Q_length_ratio=0.426 ; DESCRIPTION=NB-ARC
domain-containing protein (Fragment) OS=Reticulomyxa
filosa GN=RFI_38351 PE=4 SV=1 ; EVALUE=9e-36 ;
Q/S_length_ratio=0.717"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DD82|L0DD82_SINAD ;
ALN/Q_length_ratio=0.432 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2507 PE=4 SV=1 ; EVALUE=5e-35 ;
Q/S_length_ratio=0.689"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DA12|L0DA12_SINAD ;
ALN/Q_length_ratio=0.432 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_1318 PE=4 SV=1 ; EVALUE=5e-34 ;
Q/S_length_ratio=0.856"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|C7RS72|C7RS72_ACCPU ;
ALN/Q_length_ratio=0.490 ; DESCRIPTION=WD-40 repeat
protein OS=Accumulibacter phosphatis (strain UW-1)
GN=CAP2UW1_2609 PE=4 SV=1 ; EVALUE=1e-33 ;
Q/S_length_ratio=0.357"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|K7W4U6|K7W4U6_9NOST ;
ALN/Q_length_ratio=0.429 ; DESCRIPTION=WD-40
repeat-containing protein OS=Anabaena sp. 90 GN=ANA_C12029
PE=4 SV=1 ; EVALUE=2e-33 ; Q/S_length_ratio=0.385"
/note="Pfam_scan:hit_1 (46..114);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:69; HMM_Length:71;
EVALUE:4.6e-09; BITSCORE: 35.7"
/note="Pfam_scan:hit_2 (144..194);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:49; HMM_Length:54;
EVALUE:1.9e-10; BITSCORE: 40.0"
/note="Pfam_scan:hit_3 (407..444); Pfam:PF00400.27:WD40;
Pfam_type:Repeat;HMM_aln_Length:38; HMM_Length:39;
EVALUE:0.00019; BITSCORE: 21.2"
/note="Pfam_scan:hit_4 (448..486); Pfam:PF00400.27:WD40;
Pfam_type:Repeat;HMM_aln_Length:32; HMM_Length:39;
EVALUE:1.3e-07; BITSCORE: 31.1"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MPSALRSSIA RVTRVLGGPA ESQPPTDGQL LTRFVERADP DAFAELARRH GPMVHGVCRR
61 ALGRRDGVDD AFQAAFLVLV RRADTVRPRE AVGNWLYGVA TRTARAARTK AARRGNHETP
121 MNPIHEPAAR DEAPPEETGL LPFLDREIER LPERYRVPVV LCELEGRSRG DVARQLGIPE
181 GTLSSRLAYA RKILAARLKH HAPGSLAVLL TLVATQNVIA APRLAAITLQ KLSATGTVST
241 AARTLAEDVV KGMFLSKLKV VSLTVLALTA AMIGRSGGSN RAEAQPPAPL SFARTAAPVP
301 KPLPAPKEWV LGKTWVAQPT TVNIALFSPD GKRVFSTASL VSAGAPGQPP QPFQQFREWN
361 AVTGKLEREF REKEAAELES VAFTPDRKRG ASGTKSGQLV VWDEIGGKPV RSLATGSRVW
421 AVALAPDGKW AVTGGDDGAG RLWDVATGKE QLLMRGHVGA VRGVAISPDG KTIATGSEDE
481 KLHFWDAATG KLLRQVTDAG SICGLTYTPD GKKLLSGTGT EITVRDAVTG KTLHTLGGCV
541 LPGCGVPLSS DGKLTAGYGP SADKKAYGII VSDVTTGKQV AFLTTKISFR QVTFSPDGTR
601 LVVSGSDEQH RGMLETWVLK
//