LOCUS VTR94631.1 196 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma-70 rhodopirellula
verrucomicrobium family : RNA polymerase sigma-70 factor,
Rhodopirellula/Verrucomicrobium family OS=Singulisphaera
acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454
/ MOB10) GN=Sinac_7577 PE=4 SV=1: Sigma70_r2: Sigma70_r4_2
protein.
ACCESSION LR593886-3932
PROTEIN_ID VTR94631.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_30830"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DQC0|L0DQC0_SINAD ;
ALN/Q_length_ratio=0.913 ; DESCRIPTION=RNA polymerase
sigma-70 factor, Rhodopirellula/Verrucomicrobium family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_7577 PE=4 SV=1 ;
EVALUE=3e-53 ; Q/S_length_ratio=1.071"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DKD1|L0DKD1_SINAD ;
ALN/Q_length_ratio=0.949 ; DESCRIPTION=RNA polymerase
sigma-70 factor, Rhodopirellula/Verrucomicrobium family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_5708 PE=4 SV=1 ;
EVALUE=8e-36 ; Q/S_length_ratio=1.043"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|B4DAY8|B4DAY8_9BACT ;
ALN/Q_length_ratio=0.929 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Chthoniobacter flavus
Ellin428 GN=CfE428DRAFT_6079 PE=4 SV=1 ; EVALUE=1e-35 ;
Q/S_length_ratio=1.077"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|M2B9E6|M2B9E6_9PLAN ;
ALN/Q_length_ratio=0.837 ; DESCRIPTION=ECF-like sigma
factor SigE OS=Rhodopirellula europaea 6C GN=RE6C_00483
PE=4 SV=1 ; EVALUE=5e-35 ; Q/S_length_ratio=0.995"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|A9LGX6|A9LGX6_9BACT ;
ALN/Q_length_ratio=0.832 ; DESCRIPTION=RNA polymerase
sigma factor OS=uncultured planctomycete 3FN GN=3FN_24
PE=4 SV=1 ; EVALUE=8e-35 ; Q/S_length_ratio=1.043"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|M5S9T7|M5S9T7_9PLAN ;
ALN/Q_length_ratio=0.837 ; DESCRIPTION=ECF-like sigma
factor SigE OS=Rhodopirellula europaea SH398 GN=RESH_04793
PE=4 SV=1 ; EVALUE=1e-34 ; Q/S_length_ratio=0.995"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|Q7UGQ4|Q7UGQ4_RHOBA ;
ALN/Q_length_ratio=0.837 ; DESCRIPTION=Probable ECF-like
sigma factor SigE OS=Rhodopirellula baltica (strain SH1)
GN=RB5081 PE=4 SV=1 ; EVALUE=3e-34 ;
Q/S_length_ratio=0.995"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|F2AUB9|F2AUB9_RHOBT ;
ALN/Q_length_ratio=0.837 ; DESCRIPTION=ECF-like sigma
factor SigE OS=Rhodopirellula baltica WH47 GN=RBWH47_00311
PE=4 SV=1 ; EVALUE=3e-34 ; Q/S_length_ratio=0.995"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|A6C1M3|A6C1M3_9PLAN ;
ALN/Q_length_ratio=0.903 ; DESCRIPTION=Probable ECF-like
sigma factor SigE OS=Planctomyces maris DSM 8797
GN=PM8797T_12878 PE=4 SV=1 ; EVALUE=6e-34 ;
Q/S_length_ratio=1.043"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|D5SQC0|D5SQC0_PLAL2 ;
ALN/Q_length_ratio=0.888 ; DESCRIPTION=RNA polymerase
sigma-70 factor OS=Planctomyces limnophilus (strain ATCC
43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_0524 PE=4 SV=1
; EVALUE=1e-33 ; Q/S_length_ratio=0.970"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|B4D0J5|B4D0J5_9BACT ;
ALN/Q_length_ratio=0.842 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Chthoniobacter flavus
Ellin428 GN=CfE428DRAFT_2446 PE=4 SV=1 ; EVALUE=6e-33 ;
Q/S_length_ratio=1.107"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M5T2Q6|M5T2Q6_9PLAN ;
ALN/Q_length_ratio=0.816 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like, Rhodopirellula baltica
OS=Rhodopirellula sp. SWK7 GN=RRSWK_04102 PE=4 SV=1 ;
EVALUE=4e-31 ; Q/S_length_ratio=1.133"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M5U207|M5U207_9PLAN ;
ALN/Q_length_ratio=0.883 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like, Rhodopirellula baltica
OS=Rhodopirellula sallentina SM41 GN=RSSM_06674 PE=4 SV=1
; EVALUE=1e-30 ; Q/S_length_ratio=1.059"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|A6C872|A6C872_9PLAN ;
ALN/Q_length_ratio=0.944 ; DESCRIPTION=Probable ECF-like
sigma factor SigE OS=Planctomyces maris DSM 8797
GN=PM8797T_07734 PE=4 SV=1 ; EVALUE=1e-30 ;
Q/S_length_ratio=0.985"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|K5DDU2|K5DDU2_RHOBT ;
ALN/Q_length_ratio=0.893 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
baltica SH28 GN=RBSH_04060 PE=4 SV=1 ; EVALUE=2e-30 ;
Q/S_length_ratio=0.966"
/note="Pfam_scan:hit_1 (32..100);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:69; HMM_Length:71;
EVALUE:3.8e-11; BITSCORE: 42.4"
/note="Pfam_scan:hit_2 (129..182);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:53; HMM_Length:54;
EVALUE:8.7e-08; BITSCORE: 31.5"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MAVDADYGPA SPVEPDEADR PATDKNRLFL RLFLQNQRRL YAYVLTLLPN RADADDVLQD
61 TSLTMWDKFD ANAPPTEFLA WARRVAYHKV LDFNKKSNRA QARLSQIFLK RIAETAAGQA
121 DALQLDDRRD ALATCIEKLP DPDRDLLARR FADGATTQST SEQLGRSVDA VYKALAKVRE
181 ALMQCVQKTL TQEGRA
//