LOCUS VTR94629.1 910 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_6419 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2: Secretin_N protein.
ACCESSION LR593886-3930
PROTEIN_ID VTR94629.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_30850"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.296 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=9e-52 ;
Q/S_length_ratio=1.482"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DT29|L0DT29_SINAD ;
ALN/Q_length_ratio=0.280 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7487 PE=4 SV=1 ; EVALUE=1e-51 ;
Q/S_length_ratio=1.827"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.323 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=1e-48 ;
Q/S_length_ratio=1.019"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.322 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=4e-47 ;
Q/S_length_ratio=1.888"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.281 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=5e-45 ;
Q/S_length_ratio=1.625"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.302 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=2e-44 ;
Q/S_length_ratio=2.146"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DPR4|L0DPR4_SINAD ;
ALN/Q_length_ratio=0.354 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6601 PE=4 SV=1 ; EVALUE=3e-44 ;
Q/S_length_ratio=1.502"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.267 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=5e-44 ;
Q/S_length_ratio=0.826"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.322 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=1e-43 ;
Q/S_length_ratio=2.063"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0D7L2|L0D7L2_SINAD ;
ALN/Q_length_ratio=0.337 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0185 PE=4 SV=1 ; EVALUE=2e-43 ;
Q/S_length_ratio=1.816"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DA12|L0DA12_SINAD ;
ALN/Q_length_ratio=0.326 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_1318 PE=4 SV=1 ; EVALUE=5e-43 ;
Q/S_length_ratio=1.257"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.297 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=8e-43 ;
Q/S_length_ratio=1.591"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.203 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=4e-41 ;
Q/S_length_ratio=2.853"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DIV6|L0DIV6_SINAD ;
ALN/Q_length_ratio=0.311 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4570 PE=4 SV=1 ; EVALUE=5e-41 ;
Q/S_length_ratio=1.813"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DDY6|L0DDY6_SINAD ;
ALN/Q_length_ratio=0.297 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2787 PE=4 SV=1 ; EVALUE=3e-40 ;
Q/S_length_ratio=1.667"
/note="Pfam_scan:hit_1 (41..109);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:68; HMM_Length:71;
EVALUE:5.6e-11; BITSCORE: 41.9"
/note="Pfam_scan:hit_2 (134..187);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:51; HMM_Length:54;
EVALUE:1e-11; BITSCORE: 44.0"
/note="Pfam_scan:hit_3 (454..514);
Pfam:PF03958.12:Secretin_N;
Pfam_type:Domain;HMM_aln_Length:75; HMM_Length:82;
EVALUE:2.8e-07; BITSCORE: 30.6"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MNTVVQILDT IADEAARAER TDGQLLDLFV RSRDEHAFAT VVRRHGPMVL GVCRRVLGNP
61 TDAEDAFQAA FLVLARRATA IDTRRPLAQW LYGVAYNTAR KLRQSNTRRA ARISPLAESP
121 EPHAPLPAEH NELLAILDDE LSRLPERYRA LIVLCDLEGH TRKEVAHQLA CPEGTVAGRL
181 ARAREMLAAR LTARVGAPAA AVFLAALADR TASAASPAMV TNTVRAVAID NLVRATAKGL
241 ISRRVADTTE GVLRAMFLKN VRTVASAALC CGLVLASAAG LFHFTSANAQ PTPEPNSPLN
301 RFATTNPPPL PPVVSGPKVL TVIPLRELDC TETAATLTKL FDARTTTITP VPEDKALLVY
361 ADTKTTKQVE TALAKLGEPG ARKTSVFRLD KKADCVETAK TLNEAFGKSR ATIVPVPNDH
421 VLLVYATEPD TQTVQKLIAK VLAVEPSAGA ESTTRVLTLK NRKAEEVASV IQTLVAPRRL
481 QVIALPAQNQ IILVGPPDAL ETAILLATEM EKLADKLPPV RPDTPSRPDP GVDPHMVLPT
541 KMFSFNVKDV AWSEVLDTYS TLSGLSLVTT VKPTGKFTCT PGDRKFTLTE ITDLINEGLM
601 QQKMILVRGK FTFFIHPADE RLDAKMIHQI DLNDLGEYGR TEFVQTTIPL RALDAADVKD
661 EIRRLLTPFG VIVFAKGDRI IVCDTAGNVA RIAKTLGDIE KATLNAKPFG TPGGADPRKA
721 PANSPGFDPR GGAQPSIDPR TVSPESKPLT FKFKDTPWPE VLATYAAVTG LRANISSKPK
781 GTFTFTPPKT PQTYTLAEIT DLLNEALIPE GFLIVRSWNS FTLISADEKV DPLLVRIVTV
841 AELKTCGKTE LVRVNVPVER DVNDELIAEL KKLIGPFGTI SLLKGQVAVQ GIASHVTKAV
901 TVLHQLKTEK
//