LOCUS VTR94587.1 227 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna sigma-24 ecf subfamily : RNA polymerase
sigma factor OS=Singulisphaera acidiphila (strain ATCC
BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_3777
PE=3 SV=1: Sigma70_r2: Sigma70_r4_2 protein.
ACCESSION LR593886-3888
PROTEIN_ID VTR94587.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_31270"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DGN5|L0DGN5_SINAD ;
ALN/Q_length_ratio=0.855 ; DESCRIPTION=RNA polymerase
sigma factor OS=Singulisphaera acidiphila (strain ATCC
BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_3777
PE=3 SV=1 ; EVALUE=1e-69 ; Q/S_length_ratio=1.086"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|A4A101|A4A101_9PLAN ;
ALN/Q_length_ratio=0.943 ; DESCRIPTION=RNA polymerase
sigma factor OS=Blastopirellula marina DSM 3645
GN=DSM3645_08211 PE=3 SV=1 ; EVALUE=5e-67 ;
Q/S_length_ratio=1.061"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|D5SRF5|D5SRF5_PLAL2 ;
ALN/Q_length_ratio=0.846 ; DESCRIPTION=RNA polymerase
sigma factor OS=Planctomyces limnophilus (strain ATCC
43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_2826 PE=3 SV=1
; EVALUE=2e-64 ; Q/S_length_ratio=1.091"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|A6C2X3|A6C2X3_9PLAN ;
ALN/Q_length_ratio=0.811 ; DESCRIPTION=RNA polymerase
sigma factor OS=Planctomyces maris DSM 8797
GN=PM8797T_09689 PE=3 SV=1 ; EVALUE=2e-62 ;
Q/S_length_ratio=1.220"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|D2QZ03|D2QZ03_PIRSD ;
ALN/Q_length_ratio=0.903 ; DESCRIPTION=RNA polymerase
sigma factor OS=Pirellula staleyi (strain ATCC 27377 / DSM
6068 / ICPB 4128) GN=Psta_1783 PE=3 SV=1 ; EVALUE=1e-61 ;
Q/S_length_ratio=1.013"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|M2B1U1|M2B1U1_9PLAN ;
ALN/Q_length_ratio=0.850 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula europaea 6C GN=RE6C_03487
PE=3 SV=1 ; EVALUE=5e-59 ; Q/S_length_ratio=0.962"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|M5RVT6|M5RVT6_9PLAN ;
ALN/Q_length_ratio=0.947 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula maiorica SM1 GN=RMSM_03543
PE=3 SV=1 ; EVALUE=2e-58 ; Q/S_length_ratio=1.041"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|Q7UW29|Q7UW29_RHOBA ;
ALN/Q_length_ratio=0.850 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula baltica (strain SH1)
GN=rpsH PE=3 SV=1 ; EVALUE=2e-58 ; Q/S_length_ratio=0.962"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|K5DF58|K5DF58_RHOBT ;
ALN/Q_length_ratio=0.850 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula baltica SH28 GN=RBSH_03205
PE=3 SV=1 ; EVALUE=2e-58 ; Q/S_length_ratio=0.962"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L7C9H5|L7C9H5_RHOBT ;
ALN/Q_length_ratio=0.850 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula baltica SWK14
GN=RBSWK_06294 PE=3 SV=1 ; EVALUE=2e-58 ;
Q/S_length_ratio=0.962"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|F2AY42|F2AY42_RHOBT ;
ALN/Q_length_ratio=0.850 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula baltica WH47
GN=RBWH47_02893 PE=3 SV=1 ; EVALUE=2e-58 ;
Q/S_length_ratio=0.962"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M5S9L5|M5S9L5_9PLAN ;
ALN/Q_length_ratio=0.850 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula europaea SH398
GN=RESH_05167 PE=3 SV=1 ; EVALUE=3e-58 ;
Q/S_length_ratio=0.962"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|F0SRW7|F0SRW7_PLABD ;
ALN/Q_length_ratio=0.855 ; DESCRIPTION=RNA polymerase
sigma factor OS=Planctomyces brasiliensis (strain ATCC
49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448)
GN=Plabr_2683 PE=3 SV=1 ; EVALUE=1e-56 ;
Q/S_length_ratio=1.102"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M5TUQ1|M5TUQ1_9PLAN ;
ALN/Q_length_ratio=0.863 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula sallentina SM41
GN=RSSM_05855 PE=3 SV=1 ; EVALUE=2e-55 ;
Q/S_length_ratio=0.880"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|E8QWA5|E8QWA5_ISOPI ;
ALN/Q_length_ratio=0.868 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Isosphaera pallida
(strain ATCC 43644 / DSM 9630 / IS1B) GN=Isop_0195 PE=4
SV=1 ; EVALUE=3e-53 ; Q/S_length_ratio=0.923"
/note="Pfam_scan:hit_1 (34..102);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:70; HMM_Length:71;
EVALUE:9.8e-22; BITSCORE: 76.3"
/note="Pfam_scan:hit_2 (141..194);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:51; HMM_Length:54;
EVALUE:6.9e-14; BITSCORE: 51.0"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MAIGHTSAQM ALRDPDIRLM LRVRDDDTAA FGELVERFQH RLVAVMHHLV GSAEEAEDLA
61 QEVFLRVYRT RKKYTPKAKF STWLFTIANN LALNALRDRK RRPVMPLEVR DSGPLGPRPT
121 ETLAPTRADP PTHNLQQQEL AEVIRTALDG LNERQRMAIV LNKFEDMNYS DIADVMALTT
181 KAVKSLLSRA RSKLREALQG YIYMDGEVPP PEDVEVEGER VTEDADP
//