LOCUS VTR94564.1 661 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_0185 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2: PD40 protein.
ACCESSION LR593886-3865
PROTEIN_ID VTR94564.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_31500"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0D7L2|L0D7L2_SINAD ;
ALN/Q_length_ratio=0.428 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0185 PE=4 SV=1 ; EVALUE=7e-41 ;
Q/S_length_ratio=1.319"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.401 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=9e-40 ;
Q/S_length_ratio=1.559"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.310 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=3e-38 ;
Q/S_length_ratio=1.156"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.434 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=3e-38 ;
Q/S_length_ratio=0.600"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.345 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=5e-38 ;
Q/S_length_ratio=1.077"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.316 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=5e-38 ;
Q/S_length_ratio=1.371"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.434 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=2e-37 ;
Q/S_length_ratio=1.180"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.446 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=2e-36 ;
Q/S_length_ratio=2.072"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.463 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=2e-34 ;
Q/S_length_ratio=0.740"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DA12|L0DA12_SINAD ;
ALN/Q_length_ratio=0.407 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_1318 PE=4 SV=1 ; EVALUE=3e-34 ;
Q/S_length_ratio=0.913"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.437 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=4e-34 ;
Q/S_length_ratio=1.499"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.345 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=6e-34 ;
Q/S_length_ratio=0.539"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DPR4|L0DPR4_SINAD ;
ALN/Q_length_ratio=0.505 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6601 PE=4 SV=1 ; EVALUE=2e-33 ;
Q/S_length_ratio=1.091"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DIV6|L0DIV6_SINAD ;
ALN/Q_length_ratio=0.322 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4570 PE=4 SV=1 ; EVALUE=8e-33 ;
Q/S_length_ratio=1.317"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DKL4|L0DKL4_SINAD ;
ALN/Q_length_ratio=0.433 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5058 PE=4 SV=1 ; EVALUE=2e-31 ;
Q/S_length_ratio=0.689"
/note="Pfam_scan:hit_1 (39..111);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:64; HMM_Length:71;
EVALUE:1.1e-08; BITSCORE: 34.5"
/note="Pfam_scan:hit_2 (134..186);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:49; HMM_Length:54;
EVALUE:3.2e-09; BITSCORE: 36.1"
/note="Pfam_scan:hit_3 (494..518); Pfam:PF07676.7:PD40;
Pfam_type:Repeat;HMM_aln_Length:13; HMM_Length:39;
EVALUE:0.11; BITSCORE: 12.1"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MSTARPAEIL RQLEHTGAPD VELLAQFVLT KSAVAFEELV RRHGALVLGV CRRVTRNPQD
61 AEDAFQATFL VLAQKAGVLR SDVRLWSWLY GVAFRVSWRA RRAAFRRRAR EVLVSKLPEP
121 RAPVSSPEGP ELGSILDEEL AALSECYREA IILCDLRGAS REEAATALGI PEGTLSSRLA
181 NGRKKFAARL AKRGIALSVA VLPIAVAEAQ GATAVPIELI RKTCELVTDY ASSGTIPGPL
241 AELTKRGLVV RKTFAFGLVM VAAITGAVIA ANPIAAPPAG PPKPPATAKT EVVALPQGEQ
301 KALPALATPP RIIAGWDLPI ANPERVIWAP LGDRLAVVGA VAIRAQSEGE LRFQPAFVLL
361 KYTGKSDPEN IARTAMPRNG SVVGFTPDGK QLVTDRRERH LLSGLHQLVY WDPEKAEVGP
421 VNSIPSLQNK AKLRTVSFDG VNVDDTYAFD SNGKTFRAVS YDRGAINEPK TLDVIEVDTT
481 TGKSGKPLVT VPWASCTLSP NGKRLAFTVS DGARVRVYDI DNRDKPELSV FALPDKVDAK
541 RNAVLLPHMF SPDGNRLVIF LGSNQAFVVD ALTGKSVAAL EGEPNWGRAV FNSDGRLLAM
601 PERSALTIWD TSTGRRLKSW KSETAVFAFH PTRPLLVVAE PNGEGETRLG FWDFSAEVEK
661 K
//