LOCUS VTR94481.1 213 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_6693 PE=4 SV=1: Sigma70_r4_2
protein.
ACCESSION LR593886-3782
PROTEIN_ID VTR94481.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_32330"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DND2|L0DND2_SINAD ;
ALN/Q_length_ratio=0.906 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6693 PE=4 SV=1 ; EVALUE=1e-63 ;
Q/S_length_ratio=1.009"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DB31|L0DB31_SINAD ;
ALN/Q_length_ratio=0.953 ; DESCRIPTION=RNA polymerase
sigma-70 factor, Planctomycetaceae-specific subfamily 1
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_2102 PE=4 SV=1 ;
EVALUE=4e-59 ; Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DFY4|L0DFY4_SINAD ;
ALN/Q_length_ratio=0.977 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3944 PE=4 SV=1 ; EVALUE=4e-54 ;
Q/S_length_ratio=0.977"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|A6CBF0|A6CBF0_9PLAN ;
ALN/Q_length_ratio=0.859 ; DESCRIPTION=Probable RNA
polymerase sigma factor cnrH OS=Planctomyces maris DSM
8797 GN=PM8797T_15646 PE=4 SV=1 ; EVALUE=3e-49 ;
Q/S_length_ratio=1.014"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|F0SK73|F0SK73_PLABD ;
ALN/Q_length_ratio=0.883 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Planctomyces
brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /
NBRC 103401 / IFAM 1448) GN=Plabr_2198 PE=4 SV=1 ;
EVALUE=1e-45 ; Q/S_length_ratio=1.024"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|M5TD35|M5TD35_9PLAN ;
ALN/Q_length_ratio=0.925 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Rhodopirellula sp. SWK7
GN=RRSWK_00700 PE=4 SV=1 ; EVALUE=3e-43 ;
Q/S_length_ratio=1.054"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DCY3|L0DCY3_SINAD ;
ALN/Q_length_ratio=0.944 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2810 PE=4 SV=1 ; EVALUE=6e-40 ;
Q/S_length_ratio=1.014"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M5RUR2|M5RUR2_9PLAN ;
ALN/Q_length_ratio=0.812 ; DESCRIPTION=RNA polymerase
sigma factor cnrH OS=Rhodopirellula maiorica SM1
GN=RMSM_00130 PE=4 SV=1 ; EVALUE=2e-39 ;
Q/S_length_ratio=1.070"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M5TVJ2|M5TVJ2_9PLAN ;
ALN/Q_length_ratio=0.718 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Rhodopirellula
sallentina SM41 GN=RSSM_05360 PE=4 SV=1 ; EVALUE=7e-38 ;
Q/S_length_ratio=1.357"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DGB6|L0DGB6_SINAD ;
ALN/Q_length_ratio=0.892 ; DESCRIPTION=RNA polymerase
sigma-70 factor, Planctomycetaceae-specific subfamily 1
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_3626 PE=4 SV=1 ;
EVALUE=9e-36 ; Q/S_length_ratio=1.044"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|D5SV26|D5SV26_PLAL2 ;
ALN/Q_length_ratio=0.901 ; DESCRIPTION=RNA polymerase
sigma-70 factor OS=Planctomyces limnophilus (strain ATCC
43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_3499 PE=4 SV=1
; EVALUE=3e-35 ; Q/S_length_ratio=1.014"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DI69|L0DI69_SINAD ;
ALN/Q_length_ratio=0.883 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4146 PE=4 SV=1 ; EVALUE=5e-35 ;
Q/S_length_ratio=1.014"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|M5U881|M5U881_9PLAN ;
ALN/Q_length_ratio=0.906 ; DESCRIPTION=RNA polymerase
sigma-E type, Rhodopirellula baltica OS=Rhodopirellula
sallentina SM41 GN=RSSM_00921 PE=4 SV=1 ; EVALUE=4e-34 ;
Q/S_length_ratio=0.986"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|Q7UKZ0|Q7UKZ0_RHOBA ;
ALN/Q_length_ratio=0.911 ; DESCRIPTION=Probable RNA
polymerase sigma factor cnrH OS=Rhodopirellula baltica
(strain SH1) GN=cnrH PE=4 SV=1 ; EVALUE=9e-33 ;
Q/S_length_ratio=0.955"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|D2R2W5|D2R2W5_PIRSD ;
ALN/Q_length_ratio=0.934 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_4045
PE=4 SV=1 ; EVALUE=2e-32 ; Q/S_length_ratio=0.991"
/note="Pfam_scan:hit_1 (144..197);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:53; HMM_Length:54;
EVALUE:4e-14; BITSCORE: 51.8"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MTDVSDNLLE PGLREAAAGD ARAWRVLVER HHARLRRMAG LRLDPRLRGR VDPSDVLQEA
61 YLDAARRLPE YLEAPPLPFF LWLRQLVGTR LAKAHRAHLG TAARDVRREA RPEPAPAASS
121 VALAEHLTAA GPRPSEAAAR QELRDRLRAA LDEMDPIDRE VLALRHFEQL TNAEIARTLG
181 LADGTASKRY VRALERLQDI LAADPGLIDG WLT
//