LOCUS VTR94356.1 442 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana RNA-directed DNA polymerase (Reverse
transcriptase) (Fragment) OS=mine drainage metagenome
GN=B1B_02047 PE=4 SV=1: RVT_1: GIIM protein.
ACCESSION LR593886-3657
PROTEIN_ID VTR94356.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_33580"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|Q89BF9|Q89BF9_BRADU ;
ALN/Q_length_ratio=0.998 ; DESCRIPTION=Bll8195 protein
OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM
13628 / NBRC 14792 / USDA 110) GN=bll8195 PE=4 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=0.998"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|B4CYA7|B4CYA7_9BACT ;
ALN/Q_length_ratio=0.982 ; DESCRIPTION=RNA-directed DNA
polymerase (Reverse transcriptase) OS=Chthoniobacter
flavus Ellin428 GN=CfE428DRAFT_1645 PE=4 SV=1 ; EVALUE=0.0
; Q/S_length_ratio=0.917"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|G7DNY7|G7DNY7_BRAJP ;
ALN/Q_length_ratio=0.998 ; DESCRIPTION=Uncharacterized
protein OS=Bradyrhizobium japonicum USDA 6 GN=BJ6T_88080
PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|V2K9T6|V2K9T6_SALDZ ;
ALN/Q_length_ratio=1.002 ; DESCRIPTION=Uncharacterized
protein OS=Salmonella enterica subsp. diarizonae serovar
60:r:e,n,x,z15 str. 01-0170 GN=SED60170_01182 PE=4 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=0.923"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|T0YSN7|T0YSN7_9ZZZZ ;
ALN/Q_length_ratio=0.921 ; DESCRIPTION=RNA-directed DNA
polymerase (Reverse transcriptase) OS=mine drainage
metagenome GN=B2A_12249 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.086"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|T1BRQ6|T1BRQ6_9ZZZZ ;
ALN/Q_length_ratio=0.980 ; DESCRIPTION=RNA-directed DNA
polymerase (Reverse transcriptase) (Fragment) OS=mine
drainage metagenome GN=B1B_02047 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.016"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|A0A023XW16|A0A023XW16_BRAJP ;
ALN/Q_length_ratio=0.907 ; DESCRIPTION=Putative prophage
LambdaSa1, reverse transcriptase/maturase family protein
OS=Bradyrhizobium japonicum SEMIA 5079 GN=BJS_08589 PE=4
SV=1 ; EVALUE=1e-169 ; Q/S_length_ratio=1.100"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|T1C5P1|T1C5P1_9ZZZZ ;
ALN/Q_length_ratio=0.729 ; DESCRIPTION=RNA-directed DNA
polymerase (Reverse transcriptase) (Fragment) OS=mine
drainage metagenome GN=B2A_03620 PE=4 SV=1 ; EVALUE=1e-148
; Q/S_length_ratio=1.368"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|G0JP17|G0JP17_9GAMM ;
ALN/Q_length_ratio=0.998 ; DESCRIPTION=RNA-directed DNA
polymerase (Reverse transcriptase) OS=Acidithiobacillus
ferrivorans SS3 GN=Acife_2323 PE=4 SV=1 ; EVALUE=1e-146 ;
Q/S_length_ratio=1.002"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|T1A3U3|T1A3U3_9ZZZZ ;
ALN/Q_length_ratio=0.964 ; DESCRIPTION=RNA-directed DNA
polymerase (Reverse transcriptase) OS=mine drainage
metagenome GN=B1B_10975 PE=4 SV=1 ; EVALUE=1e-143 ;
Q/S_length_ratio=0.998"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|W3V5N8|W3V5N8_PHOTE ;
ALN/Q_length_ratio=0.980 ; DESCRIPTION=Retron-type reverse
transcriptase OS=Photorhabdus temperata subsp. khanii NC19
GN=PTE_03105 PE=4 SV=1 ; EVALUE=1e-140 ;
Q/S_length_ratio=0.953"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|V5C6R6|V5C6R6_9GAMM ;
ALN/Q_length_ratio=0.964 ; DESCRIPTION=RNA-directed DNA
polymerase OS=Methyloglobulus morosus KoM1 GN=MGMO_3c00040
PE=4 SV=1 ; EVALUE=1e-139 ; Q/S_length_ratio=0.957"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|I2IBG2|I2IBG2_9BURK ;
ALN/Q_length_ratio=0.964 ; DESCRIPTION=Retron-type reverse
transcriptase OS=Burkholderia sp. Ch1-1
GN=BCh11DRAFT_07959 PE=4 SV=1 ; EVALUE=1e-139 ;
Q/S_length_ratio=1.014"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|K8RF13|K8RF13_9BURK ;
ALN/Q_length_ratio=0.964 ; DESCRIPTION=RNA-directed DNA
polymerase (Reverse transcriptase) OS=Burkholderia sp.
SJ98 GN=BURK_004812 PE=4 SV=1 ; EVALUE=1e-137 ;
Q/S_length_ratio=0.967"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|F9ZUD0|F9ZUD0_ACICS ;
ALN/Q_length_ratio=0.708 ; DESCRIPTION=RNA-directed DNA
polymerase (Reverse transcriptase) OS=Acidithiobacillus
caldus (strain SM-1) GN=Atc_m208 PE=4 SV=1 ; EVALUE=1e-137
; Q/S_length_ratio=1.319"
/note="Pfam_scan:hit_1 (97..319); Pfam:PF00078.22:RVT_1;
Pfam_type:Family;HMM_aln_Length:213; HMM_Length:214;
EVALUE:6e-34; BITSCORE: 117.2"
/note="Pfam_scan:hit_2 (340..421); Pfam:PF08388.6:GIIM;
Pfam_type:Family;HMM_aln_Length:75; HMM_Length:80;
EVALUE:4.9e-14; BITSCORE: 51.8"
BEGIN
1 MSLPTPVPTV EKLQTALQAK AKAAAGYRFY TLWDKVCRPD VLAEAYRRCR ANRGAPGVDG
61 QTFEQIESAG VVPWLAALQE ELRRQEYRPQ PLLRVWIAKS NGGQRPLGIP SIRDRVAQMA
121 VLLVIGPIFE ADLCDEQYGF RSGIDAKMAV RRVYFNVTER GLREVVDADL SDYFNTIPHG
181 PLMRCLSRRI ADGSVLSVVK RWLQAPVVER HERGERRTTV AADTNRGTPQ GGVASPLLAN
241 LYFRRFVLAW KQFGHEQRLR AHVVNYADDL VICCRPGSGA EAMATFRKLI VRLGLSVNER
301 KTRLATLPEE SIDFLGYTIG QFHGRNGRPY IGTRPSKKSV CKLRARIHEE TSSRWNWQQP
361 AERVEVLNPI LRGWCGYFNQ GPVVRVYRAV RAYIERRFRR WLMRREQRRG TGYKRYPDRY
421 LYEELGLFPV PDQRATTPNA KT
//