LOCUS VTR94286.1 196 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase subunit sigma-24 : RNA
polymerase sigma-70 factor, ECF subfamily OS=uncultured
planctomycete GN=HGMM_F01A04C14 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2 protein.
ACCESSION LR593886-3587
PROTEIN_ID VTR94286.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_34280"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|H5S881|H5S881_9BACT ;
ALN/Q_length_ratio=0.888 ; DESCRIPTION=RNA polymerase
sigma-70 factor, ECF subfamily OS=uncultured planctomycete
GN=HGMM_F01A04C14 PE=4 SV=1 ; EVALUE=4e-67 ;
Q/S_length_ratio=1.083"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|A6CB75|A6CB75_9PLAN ;
ALN/Q_length_ratio=0.867 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily protein OS=Planctomyces
maris DSM 8797 GN=PM8797T_19196 PE=4 SV=1 ; EVALUE=3e-29 ;
Q/S_length_ratio=1.114"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|E5Z4I6|E5Z4I6_9BACL ;
ALN/Q_length_ratio=0.852 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily protein OS=Paenibacillus
vortex V453 GN=PVOR_30248 PE=4 SV=1 ; EVALUE=3e-14 ;
Q/S_length_ratio=0.856"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|F3MF03|F3MF03_9BACL ;
ALN/Q_length_ratio=0.888 ; DESCRIPTION=Sigma-70 region 2
OS=Paenibacillus sp. HGF5 GN=HMPREF9412_4679 PE=4 SV=1 ;
EVALUE=6e-14 ; Q/S_length_ratio=0.856"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|D3EJ27|D3EJ27_GEOS4 ;
ALN/Q_length_ratio=0.888 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Geobacillus sp. (strain
Y412MC10) GN=GYMC10_5592 PE=4 SV=1 ; EVALUE=1e-13 ;
Q/S_length_ratio=0.856"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|W4CZA0|W4CZA0_9BACL ;
ALN/Q_length_ratio=0.888 ; DESCRIPTION=ECF subfamily RNA
polymerase sigma-24 factor OS=Paenibacillus sp. FSL H8-457
GN=C172_19528 PE=4 SV=1 ; EVALUE=1e-13 ;
Q/S_length_ratio=0.856"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L1M0W8|L1M0W8_PSEPU ;
ALN/Q_length_ratio=0.776 ; DESCRIPTION=ECF subfamily RNA
polymerase sigma factor OS=Pseudomonas putida CSV86
GN=CSV86_12265 PE=4 SV=1 ; EVALUE=2e-13 ;
Q/S_length_ratio=1.174"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M8DFZ6|M8DFZ6_9BACL ;
ALN/Q_length_ratio=0.847 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Brevibacillus borstelensis AK1
GN=I532_11984 PE=4 SV=1 ; EVALUE=4e-13 ;
Q/S_length_ratio=1.083"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|W6JZC9|W6JZC9_9MICO ;
ALN/Q_length_ratio=0.791 ; DESCRIPTION=Putative RNA
polymerase ECF-subfamily sigma factor OS=Tetrasphaera
australiensis Ben110 GN=BN11_3740001 PE=4 SV=1 ;
EVALUE=6e-13 ; Q/S_length_ratio=1.054"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|U8RPJ9|U8RPJ9_PSEAI ;
ALN/Q_length_ratio=0.770 ; DESCRIPTION=RNA polymerase
ECF-subfamily sigma-70 factor OS=Pseudomonas aeruginosa
BWHPSA020 GN=Q033_05744 PE=4 SV=1 ; EVALUE=1e-12 ;
Q/S_length_ratio=1.146"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|U8XSQ0|U8XSQ0_PSEAI ;
ALN/Q_length_ratio=0.770 ; DESCRIPTION=RNA polymerase
ECF-subfamily sigma-70 factor OS=Pseudomonas aeruginosa
BWHPSA003 GN=Q016_00927 PE=4 SV=1 ; EVALUE=1e-09 ;
Q/S_length_ratio=1.146"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|U8C4M5|U8C4M5_PSEAI ;
ALN/Q_length_ratio=0.770 ; DESCRIPTION=RNA polymerase
ECF-subfamily sigma-70 factor OS=Pseudomonas aeruginosa
C51 GN=Q090_03252 PE=4 SV=1 ; EVALUE=1e-09 ;
Q/S_length_ratio=1.146"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|U9RYH5|U9RYH5_PSEAI ;
ALN/Q_length_ratio=0.770 ; DESCRIPTION=RNA polymerase
ECF-subfamily sigma-70 factor OS=Pseudomonas aeruginosa
CF127 GN=Q001_00828 PE=4 SV=1 ; EVALUE=1e-09 ;
Q/S_length_ratio=1.146"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|U8Y1Q5|U8Y1Q5_PSEAI ;
ALN/Q_length_ratio=0.770 ; DESCRIPTION=RNA polymerase
ECF-subfamily sigma-70 factor OS=Pseudomonas aeruginosa
BWHPSA002 GN=Q015_00951 PE=4 SV=1 ; EVALUE=1e-09 ;
Q/S_length_ratio=1.146"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|A0A071K0V1|A0A071K0V1_PSEAI ;
ALN/Q_length_ratio=0.770 ; DESCRIPTION=RNA polymerase
sigma70 OS=Pseudomonas aeruginosa C0324C GN=BH79_10330
PE=4 SV=1 ; EVALUE=1e-09 ; Q/S_length_ratio=1.146"
/note="Pfam_scan:hit_1 (24..95);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:66; HMM_Length:71;
EVALUE:1.1e-12; BITSCORE: 47.3"
/note="Pfam_scan:hit_2 (122..175);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:51; HMM_Length:54;
EVALUE:1.6e-11; BITSCORE: 43.4"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MPKGEANPPA LPGDSTRRAE FEALYQQHSR EVWALAYARW MDSDLAMDIT QEAFLRLWKQ
61 WEAGGEDIQN PRAWLLRVAR NLAEDYAKSA FRRNGTQPPE LLNGVRSSQP LPVDELERQE
121 QFAQLRAVLD EMAPADREIL TLRYALDYDA NTIAEQLDVA VTAVHMRLSR ARQRLAERLS
181 IHGDFTPGET ASETNT
//