LOCUS VTR94202.1 413 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rnd transporter : RND family efflux
transporter, MFP subunit OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7473 PE=4 SV=1: HlyD protein.
ACCESSION LR593886-3503
PROTEIN_ID VTR94202.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_35120"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DRA3|L0DRA3_SINAD ;
ALN/Q_length_ratio=0.925 ; DESCRIPTION=RND family efflux
transporter, MFP subunit OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7473 PE=4 SV=1 ; EVALUE=1e-154 ;
Q/S_length_ratio=0.976"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DGV8|L0DGV8_SINAD ;
ALN/Q_length_ratio=0.874 ; DESCRIPTION=RND family efflux
transporter, MFP subunit OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3860 PE=4 SV=1 ; EVALUE=1e-105 ;
Q/S_length_ratio=1.017"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DLK6|L0DLK6_SINAD ;
ALN/Q_length_ratio=0.976 ; DESCRIPTION=RND family efflux
transporter, MFP subunit OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6016 PE=4 SV=1 ; EVALUE=1e-100 ;
Q/S_length_ratio=0.988"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|Q608A1|Q608A1_METCA ;
ALN/Q_length_ratio=0.881 ; DESCRIPTION=Multidrug efflux
system, HlyD family subunit OS=Methylococcus capsulatus
(strain ATCC 33009 / NCIMB 11132 / Bath) GN=MCA1596 PE=4
SV=1 ; EVALUE=7e-99 ; Q/S_length_ratio=1.113"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|V5C6H1|V5C6H1_9GAMM ;
ALN/Q_length_ratio=0.903 ; DESCRIPTION=Efflux pump
periplasmic linker BepF OS=Methyloglobulus morosus KoM1
GN=bepF PE=4 SV=1 ; EVALUE=8e-96 ; Q/S_length_ratio=1.043"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|G3ITM7|G3ITM7_9GAMM ;
ALN/Q_length_ratio=0.886 ; DESCRIPTION=Efflux transporter,
RND family, MFP subunit OS=Methylobacter tundripaludum
SV96 GN=Mettu_0196 PE=4 SV=1 ; EVALUE=2e-90 ;
Q/S_length_ratio=0.972"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|B4DBB6|B4DBB6_9BACT ;
ALN/Q_length_ratio=0.896 ; DESCRIPTION=Efflux transporter,
RND family, MFP subunit OS=Chthoniobacter flavus Ellin428
GN=CfE428DRAFT_6207 PE=4 SV=1 ; EVALUE=3e-88 ;
Q/S_length_ratio=0.979"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|D5SNK5|D5SNK5_PLAL2 ;
ALN/Q_length_ratio=0.918 ; DESCRIPTION=Efflux transporter,
RND family, MFP subunit OS=Planctomyces limnophilus
(strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290)
GN=Plim_2293 PE=4 SV=1 ; EVALUE=3e-88 ;
Q/S_length_ratio=0.960"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|G0A1J1|G0A1J1_METMM ;
ALN/Q_length_ratio=0.828 ; DESCRIPTION=Efflux transporter,
RND family, MFP subunit OS=Methylomonas methanica (strain
MC09) GN=Metme_0440 PE=4 SV=1 ; EVALUE=1e-86 ;
Q/S_length_ratio=0.995"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|H8GKZ1|H8GKZ1_METAL ;
ALN/Q_length_ratio=0.818 ; DESCRIPTION=RND family efflux
transporter, MFP subunit OS=Methylomicrobium album BG8
GN=Metal_2780 PE=4 SV=1 ; EVALUE=1e-85 ;
Q/S_length_ratio=0.988"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|Q1PZQ8|Q1PZQ8_9BACT ;
ALN/Q_length_ratio=0.850 ; DESCRIPTION=Strongly similar to
RND multidrug efflux membrane fusion protein MexE
OS=Candidatus Kuenenia stuttgartiensis GN=MexE PE=4 SV=1 ;
EVALUE=2e-85 ; Q/S_length_ratio=1.032"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|A0A023XN40|A0A023XN40_BRAJP ;
ALN/Q_length_ratio=0.893 ; DESCRIPTION=Membrane fusion
protein mtrC OS=Bradyrhizobium japonicum SEMIA 5079
GN=BJS_01223 PE=4 SV=1 ; EVALUE=2e-84 ;
Q/S_length_ratio=1.119"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|G7DC46|G7DC46_BRAJP ;
ALN/Q_length_ratio=0.893 ; DESCRIPTION=Multidrug
resistance protein OS=Bradyrhizobium japonicum USDA 6
GN=BJ6T_26960 PE=4 SV=1 ; EVALUE=4e-84 ;
Q/S_length_ratio=1.110"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|D8K5N5|D8K5N5_NITWC ;
ALN/Q_length_ratio=0.913 ; DESCRIPTION=Efflux transporter,
RND family, MFP subunit OS=Nitrosococcus watsoni (strain
C-113) GN=Nwat_1286 PE=4 SV=1 ; EVALUE=1e-83 ;
Q/S_length_ratio=1.015"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|Q3JA50|Q3JA50_NITOC ;
ALN/Q_length_ratio=0.944 ; DESCRIPTION=Secretion protein
HlyD OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB
11848) GN=Noc_1828 PE=4 SV=1 ; EVALUE=3e-83 ;
Q/S_length_ratio=1.017"
/note="Pfam_scan:hit_1 (63..376); Pfam:PF00529.15:HlyD;
Pfam_type:Family;HMM_aln_Length:301; HMM_Length:305;
EVALUE:4.6e-26; BITSCORE: 91.8"
/note="GO_domain:GO:0055085"
/note="GO_domain:GO:0005575"
BEGIN
1 MSKRALWGGS CLGALLIAFT AGCRQKPAQQ AGPTQPVVPV SHPVQREVTE FVEYTGRTDA
61 VQAVGIRARV TGYLVRSPFK EGDIVRGPST IFGARLREGD LLFEIDPRPY KAQLEQAQSQ
121 VKLGEAQLKL AEANYARAKD TFDKGAGSKQ DLDTAKATVD EANARIEAAK SSVKLYDLNL
181 SFTQVRAPIS GQVSRYYYTL GNLINQDSTL LTTVVSVDPM YAYFDLDERT LLRVRTAINQ
241 GKIQIPAQRT ELPVAMGLEG EPGFPHQGTI DFVNNVVNPS TGTIAVRGIF PNPKPEKGSR
301 LLSPGMFVRI RVPIGQPRPA LLVVDRALGS DQGQKYAYVV NEEHKIEYRR VKAGALQDDG
361 LRVIEEGLKP TDWVVVGALQ QLKPKMEVDP EQTAMPVPGA PAQDPSAPAP PKQ
//