LOCUS VTR94185.1 337 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : Uncultured bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1: Sigma70_r2: Sigma70_r4_2:
WD40 protein.
ACCESSION LR593886-3486
PROTEIN_ID VTR94185.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_35290"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|A0A090KPX2|A0A090KPX2_9BACT ;
ALN/Q_length_ratio=1.059 ; DESCRIPTION=Uncultured
bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1 ; EVALUE=2e-40 ;
Q/S_length_ratio=0.291"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.605 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=3e-29 ;
Q/S_length_ratio=0.602"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.531 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=1e-27 ;
Q/S_length_ratio=1.056"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DQA3|L0DQA3_SINAD ;
ALN/Q_length_ratio=0.680 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6979 PE=4 SV=1 ; EVALUE=2e-26 ;
Q/S_length_ratio=0.757"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.513 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=2e-26 ;
Q/S_length_ratio=0.795"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.772 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=9e-25 ;
Q/S_length_ratio=0.377"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.736 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=5e-24 ;
Q/S_length_ratio=0.306"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.463 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=7e-24 ;
Q/S_length_ratio=0.275"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0D7L2|L0D7L2_SINAD ;
ALN/Q_length_ratio=0.831 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0185 PE=4 SV=1 ; EVALUE=7e-24 ;
Q/S_length_ratio=0.673"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DT29|L0DT29_SINAD ;
ALN/Q_length_ratio=0.519 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7487 PE=4 SV=1 ; EVALUE=2e-23 ;
Q/S_length_ratio=0.677"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.585 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=2e-23 ;
Q/S_length_ratio=0.549"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DR85|L0DR85_SINAD ;
ALN/Q_length_ratio=0.641 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7453 PE=4 SV=1 ; EVALUE=5e-23 ;
Q/S_length_ratio=0.564"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.540 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=8e-23 ;
Q/S_length_ratio=0.699"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.674 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=1e-22 ;
Q/S_length_ratio=0.589"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DQP0|L0DQP0_SINAD ;
ALN/Q_length_ratio=0.558 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7241 PE=4 SV=1 ; EVALUE=2e-22 ;
Q/S_length_ratio=0.611"
/note="Pfam_scan:hit_1 (1..71); Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:64; HMM_Length:71;
EVALUE:1.3e-07; BITSCORE: 31.1"
/note="Pfam_scan:hit_2 (96..149);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:50; HMM_Length:54;
EVALUE:8.9e-14; BITSCORE: 50.6"
/note="Pfam_scan:hit_3 (269..301); Pfam:PF00400.27:WD40;
Pfam_type:Repeat;HMM_aln_Length:29; HMM_Length:39;
EVALUE:8.4e-07; BITSCORE: 28.6"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MWRHGAMVWG ACRRVLDPDR AAAEDACQAA FVALAEHAAR LRVRPALAAW LHRVAVRAAF
61 DLSAARRSAH RLSAAHPDAP DRRPGPFREA CAREVRALLD SGLNRLPDKL RLPFVLCELE
121 GRTNAEAAAE LGCPVGTVES RLTRARQRLR AWLTARGVVP ASAGAAVALP ESARAAMVRA
181 ARPAALSPTV RALAARATPA VVSANLRVAL AVGLSVVCTV GLVLTANEPA RTPPALTRHA
241 DTMPLPATAR EGDQVPLPAG AVARLGSPHL RHGGWVYDIC FSADGARIAS TGSDGTVCVW
301 DGATGKRLFI VRRKEGGFNR VAFAPGARSW PQGRAHR
//