LOCUS VTR93847.1 202 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana extracytoplasmic sigma factor ecf :
Uncharacterized protein OS=Blastopirellula marina DSM
3645 GN=DSM3645_18456 PE=4 SV=1: Sigma70_ECF protein.
ACCESSION LR593886-3148
PROTEIN_ID VTR93847.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_38670"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|A3ZYY1|A3ZYY1_9PLAN ;
ALN/Q_length_ratio=0.911 ; DESCRIPTION=Uncharacterized
protein OS=Blastopirellula marina DSM 3645
GN=DSM3645_18456 PE=4 SV=1 ; EVALUE=7e-63 ;
Q/S_length_ratio=1.058"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|M5RVM0|M5RVM0_9PLAN ;
ALN/Q_length_ratio=0.891 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula maiorica SM1
GN=RMSM_03630 PE=4 SV=1 ; EVALUE=1e-62 ;
Q/S_length_ratio=1.041"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A6C732|A6C732_9PLAN ;
ALN/Q_length_ratio=0.896 ; DESCRIPTION=Uncharacterized
protein OS=Planctomyces maris DSM 8797 GN=PM8797T_04090
PE=4 SV=1 ; EVALUE=2e-62 ; Q/S_length_ratio=1.104"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|M5TXQ0|M5TXQ0_9PLAN ;
ALN/Q_length_ratio=0.891 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula sallentina
SM41 GN=RSSM_04606 PE=4 SV=1 ; EVALUE=6e-61 ;
Q/S_length_ratio=1.063"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DL66|L0DL66_SINAD ;
ALN/Q_length_ratio=0.960 ; DESCRIPTION=RNA polymerase
sigma factor, TIGR02999 family OS=Singulisphaera
acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454
/ MOB10) GN=Sinac_5446 PE=4 SV=1 ; EVALUE=2e-60 ;
Q/S_length_ratio=1.020"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|M5S8T7|M5S8T7_9PLAN ;
ALN/Q_length_ratio=0.911 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula europaea SH398
GN=RESH_01589 PE=4 SV=1 ; EVALUE=6e-60 ;
Q/S_length_ratio=1.080"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DFV0|L0DFV0_SINAD ;
ALN/Q_length_ratio=0.916 ; DESCRIPTION=RNA polymerase
sigma factor, TIGR02999 family OS=Singulisphaera
acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454
/ MOB10) GN=Sinac_4026 PE=4 SV=1 ; EVALUE=7e-60 ;
Q/S_length_ratio=1.058"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L7CKS4|L7CKS4_RHOBT ;
ALN/Q_length_ratio=0.916 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula baltica SWK14
GN=RBSWK_01172 PE=4 SV=1 ; EVALUE=1e-59 ;
Q/S_length_ratio=1.080"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|Q7UYG8|Q7UYG8_RHOBA ;
ALN/Q_length_ratio=0.916 ; DESCRIPTION=Putative
uncharacterized protein OS=Rhodopirellula baltica (strain
SH1) GN=RB621 PE=4 SV=1 ; EVALUE=1e-59 ;
Q/S_length_ratio=1.058"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|F2APD4|F2APD4_RHOBT ;
ALN/Q_length_ratio=0.916 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Rhodopirellula baltica WH47
GN=RBWH47_03818 PE=4 SV=1 ; EVALUE=1e-59 ;
Q/S_length_ratio=1.080"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M5TFP7|M5TFP7_9PLAN ;
ALN/Q_length_ratio=0.891 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula sp. SWK7
GN=RRSWK_04777 PE=4 SV=1 ; EVALUE=2e-59 ;
Q/S_length_ratio=1.063"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|K5DF17|K5DF17_RHOBT ;
ALN/Q_length_ratio=0.916 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula baltica SH28
GN=RBSH_03328 PE=4 SV=1 ; EVALUE=2e-59 ;
Q/S_length_ratio=1.058"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|X0S8X1|X0S8X1_9ZZZZ ;
ALN/Q_length_ratio=0.891 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S01H1_L07814 OS=marine sediment
metagenome GN=S01H1_18078 PE=4 SV=1 ; EVALUE=4e-59 ;
Q/S_length_ratio=1.069"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|A3ZQ02|A3ZQ02_9PLAN ;
ALN/Q_length_ratio=0.941 ; DESCRIPTION=Uncharacterized
protein OS=Blastopirellula marina DSM 3645
GN=DSM3645_22826 PE=4 SV=1 ; EVALUE=4e-58 ;
Q/S_length_ratio=1.063"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|X0ZJT4|X0ZJT4_9ZZZZ ;
ALN/Q_length_ratio=0.921 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S01H4_C02894 OS=marine sediment
metagenome GN=S01H4_08434 PE=4 SV=1 ; EVALUE=7e-58 ;
Q/S_length_ratio=1.005"
/note="Pfam_scan:hit_1 (1..183);
Pfam:PF07638.6:Sigma70_ECF;
Pfam_type:Family;HMM_aln_Length:177; HMM_Length:185;
EVALUE:1e-55; BITSCORE: 188.3"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MAKDMHIISA TDWGDPRAAA QLLPLVYDEL RRLAVARLAV EPPGQTLQPT ALVHEAYLRL
61 VAAGHDQWDH RGHFFAAAAE SMRRILIDAA RKKAAARHGG AMQRQMLDPE AALVPEPRED
121 LLALDEALSR LEAVDPLKAA LVKLRYFAGL SLADAATALD LSERTAGRHW AYARAWLRRA
181 VEGQCEKSEP TVAENGPGSR ID
//