LOCUS VTR93614.1 202 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana 30s ribosomal protein s4 : 30S ribosomal
protein S4 OS=Planctomyces maris DSM 8797 GN=rpsD PE=3
SV=1: Ribosomal_S4: S4 protein.
ACCESSION LR593886-2915
PROTEIN_ID VTR93614.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_41000"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|A6CE23|A6CE23_9PLAN ;
ALN/Q_length_ratio=0.995 ; DESCRIPTION=30S ribosomal
protein S4 OS=Planctomyces maris DSM 8797 GN=rpsD PE=3
SV=1 ; EVALUE=1e-65 ; Q/S_length_ratio=1.005"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|D2R163|D2R163_PIRSD ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=30S ribosomal
protein S4 OS=Pirellula staleyi (strain ATCC 27377 / DSM
6068 / ICPB 4128) GN=rpsD PE=3 SV=1 ; EVALUE=3e-64 ;
Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L7CGW3|L7CGW3_RHOBT ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=30S ribosomal
protein S4 OS=Rhodopirellula baltica SWK14 GN=rpsD PE=3
SV=1 ; EVALUE=5e-64 ; Q/S_length_ratio=0.981"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|K5EE88|K5EE88_RHOBT ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=30S ribosomal
protein S4 OS=Rhodopirellula baltica SH28 GN=rpsD PE=3
SV=1 ; EVALUE=5e-64 ; Q/S_length_ratio=0.981"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|M5S480|M5S480_9PLAN ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=30S ribosomal
protein S4 OS=Rhodopirellula europaea SH398 GN=rpsD PE=3
SV=1 ; EVALUE=5e-64 ; Q/S_length_ratio=0.981"
/note="BLAST_uniprot:hit_3 ; ACCESSION=Q7UXM6 ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=30S ribosomal
protein S4 OS=Rhodopirellula baltica (strain SH1) GN=rpsD
PE=3 SV=2 ; EVALUE=5e-64 ; Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|F2AQ04|F2AQ04_RHOBT ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=30S ribosomal
protein S4 OS=Rhodopirellula baltica WH47 GN=rpsD PE=3
SV=1 ; EVALUE=5e-64 ; Q/S_length_ratio=0.981"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|D5SRP4|D5SRP4_PLAL2 ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=30S ribosomal
protein S4 OS=Planctomyces limnophilus (strain ATCC 43296
/ DSM 3776 / IFAM 1008 / 290) GN=rpsD PE=3 SV=1 ;
EVALUE=3e-63 ; Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|A4A160|A4A160_9PLAN ;
ALN/Q_length_ratio=0.931 ; DESCRIPTION=30S ribosomal
protein S4 OS=Blastopirellula marina DSM 3645 GN=rpsD PE=3
SV=1 ; EVALUE=5e-63 ; Q/S_length_ratio=1.074"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|F0SK15|F0SK15_PLABD ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=30S ribosomal
protein S4 OS=Planctomyces brasiliensis (strain ATCC 49424
/ DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) GN=rpsD
PE=3 SV=1 ; EVALUE=3e-62 ; Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M5TRH5|M5TRH5_9PLAN ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=30S ribosomal
protein S4 OS=Rhodopirellula sp. SWK7 GN=rpsD PE=3 SV=1 ;
EVALUE=2e-61 ; Q/S_length_ratio=0.789"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|M5TT45|M5TT45_9PLAN ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=30S ribosomal
protein S4 OS=Rhodopirellula sallentina SM41 GN=rpsD PE=3
SV=1 ; EVALUE=2e-61 ; Q/S_length_ratio=0.789"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|M5S469|M5S469_9PLAN ;
ALN/Q_length_ratio=0.817 ; DESCRIPTION=30S ribosomal
protein S4 OS=Rhodopirellula maiorica SM1 GN=rpsD PE=3
SV=1 ; EVALUE=2e-54 ; Q/S_length_ratio=1.224"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0D8F3|L0D8F3_SINAD ;
ALN/Q_length_ratio=1.035 ; DESCRIPTION=30S ribosomal
protein S4 OS=Singulisphaera acidiphila (strain ATCC
BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=rpsD PE=3
SV=1 ; EVALUE=5e-51 ; Q/S_length_ratio=0.967"
/note="BLAST_uniprot:hit_15 ; ACCESSION=B9L6T8 ;
ALN/Q_length_ratio=1.030 ; DESCRIPTION=30S ribosomal
protein S4 OS=Nautilia profundicola (strain ATCC BAA-1463
/ DSM 18972 / AmH) GN=rpsD PE=3 SV=1 ; EVALUE=7e-51 ;
Q/S_length_ratio=0.971"
/note="Pfam_scan:hit_1 (2..93);
Pfam:PF00163.14:Ribosomal_S4;
Pfam_type:Family;HMM_aln_Length:90; HMM_Length:94;
EVALUE:4.2e-10; BITSCORE: 39.8"
/note="Pfam_scan:hit_2 (94..141); Pfam:PF01479.20:S4;
Pfam_type:Domain;HMM_aln_Length:47; HMM_Length:48;
EVALUE:7.8e-20; BITSCORE: 70.0"
/note="GO_domain:GO:0003735"
/note="GO_domain:GO:0042254"
/note="GO_domain:GO:0005840"
/note="GO_domain:GO:0019843"
/note="GO_domain:GO:0006412"
BEGIN
1 MSRFTRPKGK VNRALGVAVY EKHGAVKALE RREYRPGMHG LRKGKVSEYG LAMREKKKIK
61 HYYGLHERQL TRFYQLATKS TENTGTELLV LCERRLDNVV RRAGFARTRP ESRQGINHGH
121 FHVNGRKVDI ASYLVKPGDV IAVAPRKNVQ AKYRERLTEG LHNADWITSD PENLSFTVSR
181 LPTESDVSLP VEIQRVIEIL SR
//