LOCUS VTR93555.1 749 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : Uncharacterized protein OS=Isosphaera pallida
(strain ATCC 43644 / DSM 9630 / IS1B) GN=Isop_0849 PE=
4 SV=1: Sigma70_r2: Sigma70_r4_2 protein.
ACCESSION LR593886-2856
PROTEIN_ID VTR93555.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_41590"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|E8R2F4|E8R2F4_ISOPI ;
ALN/Q_length_ratio=0.306 ; DESCRIPTION=Uncharacterized
protein OS=Isosphaera pallida (strain ATCC 43644 / DSM
9630 / IS1B) GN=Isop_0849 PE=4 SV=1 ; EVALUE=6e-40 ;
Q/S_length_ratio=2.128"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DK84|L0DK84_SINAD ;
ALN/Q_length_ratio=0.286 ; DESCRIPTION=Uncharacterized
protein OS=Singulisphaera acidiphila (strain ATCC BAA-1392
/ DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_5098 PE=4 SV=1
; EVALUE=2e-34 ; Q/S_length_ratio=2.774"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.352 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=3e-34 ;
Q/S_length_ratio=1.767"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|M5TSN3|M5TSN3_9PLAN ;
ALN/Q_length_ratio=0.283 ; DESCRIPTION=Uncharacterized
protein OS=Rhodopirellula sallentina SM41 GN=RSSM_06470
PE=4 SV=1 ; EVALUE=6e-34 ; Q/S_length_ratio=1.800"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|A3ZUA1|A3ZUA1_9PLAN ;
ALN/Q_length_ratio=0.292 ; DESCRIPTION=Uncharacterized
protein OS=Blastopirellula marina DSM 3645
GN=DSM3645_21729 PE=4 SV=1 ; EVALUE=1e-33 ;
Q/S_length_ratio=2.013"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|D2R4Q6|D2R4Q6_PIRSD ;
ALN/Q_length_ratio=0.307 ; DESCRIPTION=Uncharacterized
protein OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068
/ ICPB 4128) GN=Psta_2453 PE=4 SV=1 ; EVALUE=4e-33 ;
Q/S_length_ratio=1.607"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0D7L2|L0D7L2_SINAD ;
ALN/Q_length_ratio=0.374 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0185 PE=4 SV=1 ; EVALUE=6e-33 ;
Q/S_length_ratio=1.495"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M5T6U6|M5T6U6_9PLAN ;
ALN/Q_length_ratio=0.284 ; DESCRIPTION=Uncharacterized
protein OS=Rhodopirellula sp. SWK7 GN=RRSWK_02895 PE=4
SV=1 ; EVALUE=2e-32 ; Q/S_length_ratio=1.661"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DQE6|L0DQE6_SINAD ;
ALN/Q_length_ratio=0.335 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7079 PE=4 SV=1 ; EVALUE=6e-32 ;
Q/S_length_ratio=0.786"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|A6CDR4|A6CDR4_9PLAN ;
ALN/Q_length_ratio=0.290 ; DESCRIPTION=Uncharacterized
protein OS=Planctomyces maris DSM 8797 GN=PM8797T_08429
PE=4 SV=1 ; EVALUE=2e-31 ; Q/S_length_ratio=1.873"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.352 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=2e-31 ;
Q/S_length_ratio=1.698"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.336 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=3e-31 ;
Q/S_length_ratio=1.337"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M5RX03|M5RX03_9PLAN ;
ALN/Q_length_ratio=0.314 ; DESCRIPTION=Uncharacterized
protein OS=Rhodopirellula europaea SH398 GN=RESH_05526
PE=4 SV=1 ; EVALUE=4e-31 ; Q/S_length_ratio=1.805"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|M2AVX0|M2AVX0_9PLAN ;
ALN/Q_length_ratio=0.314 ; DESCRIPTION=Uncharacterized
protein OS=Rhodopirellula europaea 6C GN=RE6C_05133 PE=4
SV=1 ; EVALUE=4e-31 ; Q/S_length_ratio=1.805"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L7C9W2|L7C9W2_RHOBT ;
ALN/Q_length_ratio=0.314 ; DESCRIPTION=Uncharacterized
protein OS=Rhodopirellula baltica SWK14 GN=RBSWK_05477
PE=4 SV=1 ; EVALUE=6e-31 ; Q/S_length_ratio=1.805"
/note="Pfam_scan:hit_1 (37..103);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:69; HMM_Length:71;
EVALUE:8.8e-06; BITSCORE: 25.2"
/note="Pfam_scan:hit_2 (124..177);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:50; HMM_Length:54;
EVALUE:3.9e-08; BITSCORE: 32.6"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MPGRVLELLH AATPDTPDAD LLARFVATRD EGAFADLVRA HGPAVYRVCR RLAPRHADDA
61 FQATFLVLAC RAGAVRKASS VGSWLIGAAG RVARQMTRRE RRSADVCATL ARPDDRNSGA
121 AELSATLDDE LSRLPDRLRA PLVSCFLYGR TQEQAATELD VSVRTLRRRL ERAKALLRLR
181 LERRGVVPAV AVALVAGVGP APAVPTELVR RTVRAALEFP NGGAVGPAAL AAKGVVNHMA
241 RLKASGLVAA AAVLIGLGAS AARQEPAPPP DTPVFPLAVP ALGERPLKLD IAFPSMADRP
301 TGERPGHVHR SANFLVTAPT AVSARAVAAE AEFQRQQIGR LWLGKEPPPW AVRCEIVVRG
361 APDRATGATT FDFHTDPNGR PVCRGAKMEL TGPLEGVLST ALPPEVTHAV LAHHFGKPLP
421 RWAGAGLAVM SLGDEEQVQQ DQKCRELLNA GKGIRLRILF RKTEYPRDAM VLVAQGHSIV
481 RFLLASEPAP GKAHRALLEF LRVGAEENTA ESWNKAAKDV YRFDSVDALE TAWLATLRKP
541 PSAPKAPTPD DEEPGLIPPT RLPEARPVQK DETVVVNTRK FKLPVQIAPE RRTADRAVTL
601 FVSRGKEPWY QAGMITPDKT AFTFEAPEDG LYWLAVAVIP KDQPDSSVTA LEPALKVIVD
661 TVPPVVRVTK AERVDDRLRV SWSVTEANPG ALKVRWNVTG RESDWHDVPV ATNESSATFS
721 PGSGAKAQIQ VVQVDAAGNE GRSAVVTVE
//