LOCUS VTR93495.1 323 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana ribosomal large subunit pseudouridine
synthase d : Pseudouridine synthase OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_0906
PE=3 SV=1: PseudoU_synth_2 protein.
ACCESSION LR593886-2796
PROTEIN_ID VTR93495.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_42190"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|D2R795|D2R795_PIRSD ;
ALN/Q_length_ratio=1.025 ; DESCRIPTION=Pseudouridine
synthase OS=Pirellula staleyi (strain ATCC 27377 / DSM
6068 / ICPB 4128) GN=Psta_0906 PE=3 SV=1 ; EVALUE=8e-82 ;
Q/S_length_ratio=0.947"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|B5JHH9|B5JHH9_9BACT ;
ALN/Q_length_ratio=0.932 ; DESCRIPTION=Pseudouridine
synthase OS=Verrucomicrobiae bacterium DG1235
GN=VDG1235_3973 PE=3 SV=1 ; EVALUE=4e-64 ;
Q/S_length_ratio=0.997"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|D0LGK2|D0LGK2_HALO1 ;
ALN/Q_length_ratio=0.926 ; DESCRIPTION=Pseudouridine
synthase, RluA family OS=Haliangium ochraceum (strain DSM
14365 / JCM 11303 / SMP-2) GN=Hoch_0107 PE=4 SV=1 ;
EVALUE=8e-60 ; Q/S_length_ratio=1.062"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|A0A017T8K6|A0A017T8K6_9DELT ;
ALN/Q_length_ratio=0.938 ; DESCRIPTION=Pseudouridine
synthase OS=Chondromyces apiculatus DSM 436 GN=CAP_3121
PE=3 SV=1 ; EVALUE=2e-57 ; Q/S_length_ratio=0.868"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|S4XIR3|S4XIR3_SORCE ;
ALN/Q_length_ratio=0.985 ; DESCRIPTION=Pseudouridine
synthase OS=Sorangium cellulosum So0157-2 GN=SCE1572_00050
PE=3 SV=1 ; EVALUE=1e-56 ; Q/S_length_ratio=0.897"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|A9GHW4|A9GHW4_SORC5 ;
ALN/Q_length_ratio=0.985 ; DESCRIPTION=Pseudouridine
synthase OS=Sorangium cellulosum (strain So ce56) GN=rluD1
PE=3 SV=1 ; EVALUE=5e-54 ; Q/S_length_ratio=0.907"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|A6G5N3|A6G5N3_9DELT ;
ALN/Q_length_ratio=0.932 ; DESCRIPTION=Pseudouridine
synthase OS=Plesiocystis pacifica SIR-1 GN=PPSIR1_32487
PE=3 SV=1 ; EVALUE=4e-48 ; Q/S_length_ratio=1.003"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|A0A085Y599|A0A085Y599_9DELT ;
ALN/Q_length_ratio=0.975 ; DESCRIPTION=Pseudouridine
synthase OS=Sandaracinus amylolyticus GN=DB32_8079 PE=3
SV=1 ; EVALUE=8e-48 ; Q/S_length_ratio=0.970"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|R7GN39|R7GN39_9FIRM ;
ALN/Q_length_ratio=0.907 ; DESCRIPTION=Pseudouridine
synthase OS=Catenibacterium sp. CAG:290 GN=BN591_00876
PE=3 SV=1 ; EVALUE=4e-44 ; Q/S_length_ratio=1.056"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|A5V2B8|A5V2B8_SPHWW ;
ALN/Q_length_ratio=0.954 ; DESCRIPTION=Pseudouridine
synthase OS=Sphingomonas wittichii (strain RW1 / DSM 6014
/ JCM 10273) GN=Swit_0061 PE=3 SV=1 ; EVALUE=5e-44 ;
Q/S_length_ratio=1.006"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|E2NPT7|E2NPT7_9FIRM ;
ALN/Q_length_ratio=0.907 ; DESCRIPTION=Pseudouridine
synthase OS=Catenibacterium mitsuokai DSM 15897
GN=CATMIT_00580 PE=3 SV=1 ; EVALUE=1e-43 ;
Q/S_length_ratio=1.056"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|W0AAN7|W0AAN7_9SPHN ;
ALN/Q_length_ratio=0.941 ; DESCRIPTION=Pseudouridine
synthase OS=Sphingomonas sanxanigenens DSM 19645 = NX02
GN=NX02_04995 PE=3 SV=1 ; EVALUE=3e-43 ;
Q/S_length_ratio=1.019"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|J2ZPS1|J2ZPS1_9SPHN ;
ALN/Q_length_ratio=0.700 ; DESCRIPTION=Pseudouridine
synthase OS=Novosphingobium sp. AP12 GN=PMI02_05051 PE=3
SV=1 ; EVALUE=2e-42 ; Q/S_length_ratio=1.029"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|E3DZS5|E3DZS5_BACA1 ;
ALN/Q_length_ratio=0.913 ; DESCRIPTION=Pseudouridine
synthase OS=Bacillus atrophaeus (strain 1942)
GN=BATR1942_05525 PE=3 SV=1 ; EVALUE=6e-42 ;
Q/S_length_ratio=1.066"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|A0A076WYQ6|A0A076WYQ6_BACAT ;
ALN/Q_length_ratio=0.913 ; DESCRIPTION=Pseudouridine
synthase OS=Bacillus atrophaeus subsp. globigii
GN=DJ95_1023 PE=3 SV=1 ; EVALUE=6e-42 ;
Q/S_length_ratio=1.066"
/note="Pfam_scan:hit_1 (90..255);
Pfam:PF00849.17:PseudoU_synth_2;
Pfam_type:Family;HMM_aln_Length:162; HMM_Length:164;
EVALUE:6.4e-28; BITSCORE: 97.6"
/note="GO_domain:GO:0003723"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0016853"
/note="Enzyme_Code:EC:5.4.99.12"
BEGIN
1 MSFALPPFTV APQEAGFTLA KVLRSRLGGP SWTDVRKLIA ARRVKVGDAI CSDEARRVKE
61 DEVVVLLEHP KPLPRAAHPE RLVVRHLDEH VVVVEKPAGV NTVRHPAELE WSEQRRELDP
121 TLQDLAQWAI AHQLNRAPRD LNGLRIVHRL DKETSGLVVF ARSVLAEREL GLQFRKHTVV
181 RRYLTVVPGI LSAQTIRSRL VEDRGDGRRG STKLTGVGKE AVTHIALEER LPGYTLLSCR
241 LETGRTHQIR IHLSEAGHPV CGDKVYVKRP NGEVFDDKSE APRLALHATE LGFEHPATNE
301 HLHWSMPLPG DLQKFVEKLR GKA
//