LOCUS VTR93460.1 566 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 factor : RNA polymerase, sigma
32 subunit, RpoH OS=Isosphaera pallida (strain ATCC 43644
/ DSM 9630 / IS1B) GN=Isop_0433 PE=4 SV=1: Sigma70_r2:
Sigma70_r4 protein.
ACCESSION LR593886-2761
PROTEIN_ID VTR93460.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_42540"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0D7W5|L0D7W5_SINAD ;
ALN/Q_length_ratio=0.975 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0515 PE=4 SV=1 ; EVALUE=1e-172 ;
Q/S_length_ratio=1.016"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|E8QYQ2|E8QYQ2_ISOPI ;
ALN/Q_length_ratio=0.989 ; DESCRIPTION=RNA polymerase,
sigma 32 subunit, RpoH OS=Isosphaera pallida (strain ATCC
43644 / DSM 9630 / IS1B) GN=Isop_0433 PE=4 SV=1 ;
EVALUE=1e-172 ; Q/S_length_ratio=1.002"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|A3ZLJ0|A3ZLJ0_9PLAN ;
ALN/Q_length_ratio=0.972 ; DESCRIPTION=RNA polymerase
sigma factor OS=Blastopirellula marina DSM 3645
GN=DSM3645_09497 PE=3 SV=1 ; EVALUE=1e-154 ;
Q/S_length_ratio=1.018"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|D2R5P7|D2R5P7_PIRSD ;
ALN/Q_length_ratio=0.972 ; DESCRIPTION=RNA polymerase
sigma factor OS=Pirellula staleyi (strain ATCC 27377 / DSM
6068 / ICPB 4128) GN=Psta_2560 PE=3 SV=1 ; EVALUE=1e-154 ;
Q/S_length_ratio=1.018"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|A6CA52|A6CA52_9PLAN ;
ALN/Q_length_ratio=0.970 ; DESCRIPTION=RNA polymerase
sigma factor OS=Planctomyces maris DSM 8797
GN=PM8797T_12111 PE=3 SV=1 ; EVALUE=1e-146 ;
Q/S_length_ratio=1.018"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|M5RGC8|M5RGC8_9PLAN ;
ALN/Q_length_ratio=0.979 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula maiorica SM1 GN=RMSM_04882
PE=3 SV=1 ; EVALUE=1e-141 ; Q/S_length_ratio=1.004"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|F0SLE3|F0SLE3_PLABD ;
ALN/Q_length_ratio=0.972 ; DESCRIPTION=RNA polymerase
sigma factor OS=Planctomyces brasiliensis (strain ATCC
49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448)
GN=Plabr_4477 PE=3 SV=1 ; EVALUE=1e-140 ;
Q/S_length_ratio=1.020"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|Q7UPQ9|Q7UPQ9_RHOBA ;
ALN/Q_length_ratio=0.973 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula baltica (strain SH1)
GN=RB6780 PE=3 SV=1 ; EVALUE=1e-134 ;
Q/S_length_ratio=1.016"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L7CC39|L7CC39_RHOBT ;
ALN/Q_length_ratio=0.973 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula baltica SWK14
GN=RBSWK_04469 PE=3 SV=1 ; EVALUE=1e-134 ;
Q/S_length_ratio=1.016"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|M2A7D9|M2A7D9_9PLAN ;
ALN/Q_length_ratio=0.973 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula europaea 6C GN=RE6C_02074
PE=3 SV=1 ; EVALUE=1e-134 ; Q/S_length_ratio=1.016"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|K5DJ26|K5DJ26_RHOBT ;
ALN/Q_length_ratio=0.973 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula baltica SH28 GN=RBSH_02092
PE=3 SV=1 ; EVALUE=1e-134 ; Q/S_length_ratio=1.016"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|F2AW95|F2AW95_RHOBT ;
ALN/Q_length_ratio=0.973 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula baltica WH47
GN=RBWH47_05919 PE=3 SV=1 ; EVALUE=1e-134 ;
Q/S_length_ratio=1.016"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|M5S7D3|M5S7D3_9PLAN ;
ALN/Q_length_ratio=0.973 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula europaea SH398
GN=RESH_05818 PE=3 SV=1 ; EVALUE=1e-133 ;
Q/S_length_ratio=1.016"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M5TGJ2|M5TGJ2_9PLAN ;
ALN/Q_length_ratio=0.970 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula sp. SWK7 GN=RRSWK_02727
PE=3 SV=1 ; EVALUE=1e-132 ; Q/S_length_ratio=1.016"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|D5SPK2|D5SPK2_PLAL2 ;
ALN/Q_length_ratio=0.968 ; DESCRIPTION=RNA polymerase
sigma factor OS=Planctomyces limnophilus (strain ATCC
43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_0381 PE=3 SV=1
; EVALUE=1e-129 ; Q/S_length_ratio=1.014"
/note="Pfam_scan:hit_1 (394..463);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:57; HMM_Length:71;
EVALUE:3.3e-13; BITSCORE: 49.0"
/note="Pfam_scan:hit_2 (503..556);
Pfam:PF04545.11:Sigma70_r4;
Pfam_type:Domain;HMM_aln_Length:49; HMM_Length:50;
EVALUE:2.6e-15; BITSCORE: 55.4"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MITFKNSALK ELTEQQTRFA TAARRQLQIA NAQKLLGEIE SGRAYPYQYV CYRVTDYRSE
61 AYPDLLLSGD DLKHDLAQFI RRVERSVPPQ PIEQTVEPML TLDEVSKRFN VSTKTISRWR
121 VKGLAARRVK VNGRSQLGFP TVAVERFVAE HKVLVEKGAR FSHLTDDEKE GILRLARELR
181 DAGGTLTEVS KKIANQLSRS PEAVRYTIKN FDRGHPDGAL YPNVAGPLSD AAKQEIYLAK
241 RQHEIDMKNA KPTGDTVNLI AKRFGRARSS MYRVVNEVRA KELVRQPVDY IYNAEFDDPT
301 RESEMLADMP GLAEFDAKRA GKTPPKDVPP HMAHLYEWPL LTKEQEQHVF RKMNFLKHLL
361 HKLQDAMDPA KARVQDLVRI DELKDGIRDC RDVLINCNQR LVYAQAKQKL ALGEHIDDLV
421 SDGNLSLMRA VEKFDYGRGN KFSTYATWAI MKNFARSIPD AKTHKQRYMT GHDDLFEAKA
481 DVRTDEQEVL ALADQARSRV NRLLEHLDAR TREVIRMRTG LDGSEEMTLE QIGQHFGITK
541 ERVRQINVRG MKMLREWAAK ENVEVP
//