LOCUS VTR93452.1 327 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_6419 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2 protein.
ACCESSION LR593886-2753
PROTEIN_ID VTR93452.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_42620"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.789 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=3e-41 ;
Q/S_length_ratio=0.533"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DR85|L0DR85_SINAD ;
ALN/Q_length_ratio=0.817 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7453 PE=4 SV=1 ; EVALUE=4e-41 ;
Q/S_length_ratio=0.548"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DHB8|L0DHB8_SINAD ;
ALN/Q_length_ratio=0.789 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3834 PE=4 SV=1 ; EVALUE=2e-37 ;
Q/S_length_ratio=0.590"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.856 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=4e-37 ;
Q/S_length_ratio=1.025"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.804 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=3e-36 ;
Q/S_length_ratio=0.297"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.826 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=8e-36 ;
Q/S_length_ratio=0.584"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DQA3|L0DQA3_SINAD ;
ALN/Q_length_ratio=0.817 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6979 PE=4 SV=1 ; EVALUE=1e-34 ;
Q/S_length_ratio=0.735"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DA12|L0DA12_SINAD ;
ALN/Q_length_ratio=0.841 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_1318 PE=4 SV=1 ; EVALUE=8e-34 ;
Q/S_length_ratio=0.452"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.853 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=2e-33 ;
Q/S_length_ratio=0.771"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DQE6|L0DQE6_SINAD ;
ALN/Q_length_ratio=0.566 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7079 PE=4 SV=1 ; EVALUE=3e-33 ;
Q/S_length_ratio=0.343"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.881 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=1e-32 ;
Q/S_length_ratio=0.366"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.820 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=1e-32 ;
Q/S_length_ratio=0.741"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DPR4|L0DPR4_SINAD ;
ALN/Q_length_ratio=0.865 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6601 PE=4 SV=1 ; EVALUE=1e-32 ;
Q/S_length_ratio=0.540"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DHG5|L0DHG5_SINAD ;
ALN/Q_length_ratio=0.890 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3888 PE=4 SV=1 ; EVALUE=2e-32 ;
Q/S_length_ratio=0.466"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.550 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=2e-32 ;
Q/S_length_ratio=0.678"
/note="Pfam_scan:hit_1 (42..110);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:62; HMM_Length:71;
EVALUE:2.5e-09; BITSCORE: 36.5"
/note="Pfam_scan:hit_2 (132..185);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:52; HMM_Length:54;
EVALUE:1.6e-14; BITSCORE: 53.0"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MPPDELIRLL HATYAAPHEG VTDAELLGRC AAGKDDAAFE LLMRRHADLV WRVCCSVVRE
61 VHTAEDTFQA TFLLVARNAR AFSGRGTAAG WLYRIARHVA LKVRARCTRF QLADLDSVTS
121 ADPPHTISAE ITQLLHEELG RLAEKYRVPL VLCYLEGHTH AEAARHLGWP VGTVATRIAR
181 GRERLRDRLT RRGVVLSTTG LTTALSAGPV SAAPTSLVAV TAGAIAADTL APAVWHLAHG
241 VPTLMTRTRI ATLAAIIAGV VIAAGTVFAL VVPVDPPAPP FRWAQRQRRK RSPFRKCTRP
301 ALVFKLWPPR LPRPSWRRFS KQPRVGR
//