LOCUS VTR93005.1 491 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana transcription termination factor rho
: Transcription termination factor Rho OS=Singulisphaera
acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454
/ MOB10) GN=rho PE=3 SV=1: Rho_RNA_bind: ATP-synt_ab protein.
ACCESSION LR593886-2306
PROTEIN_ID VTR93005.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_47090"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|A6CAX4|A6CAX4_9PLAN ;
ALN/Q_length_ratio=0.886 ; DESCRIPTION=Transcription
termination factor Rho OS=Planctomyces maris DSM 8797
GN=rho PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.029"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|F0SGU6|F0SGU6_PLABD ;
ALN/Q_length_ratio=0.843 ; DESCRIPTION=Transcription
termination factor Rho OS=Planctomyces brasiliensis
(strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 /
IFAM 1448) GN=rho PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.063"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|Q1PUV0|Q1PUV0_9BACT ;
ALN/Q_length_ratio=0.882 ; DESCRIPTION=Transcription
termination factor Rho OS=Candidatus Kuenenia
stuttgartiensis GN=rho PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.084"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|D2R072|D2R072_PIRSD ;
ALN/Q_length_ratio=0.847 ; DESCRIPTION=Transcription
termination factor Rho OS=Pirellula staleyi (strain ATCC
27377 / DSM 6068 / ICPB 4128) GN=rho PE=3 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=0.948"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|I3IJW5|I3IJW5_9PLAN ;
ALN/Q_length_ratio=0.841 ; DESCRIPTION=Transcription
termination factor Rho OS=planctomycete KSU-1 GN=rho PE=3
SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.106"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|B9XPG2|B9XPG2_PEDPL ;
ALN/Q_length_ratio=0.919 ; DESCRIPTION=Transcription
termination factor Rho OS=Pedosphaera parvula (strain
Ellin514) GN=rho PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.942"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|E8QZ11|E8QZ11_ISOPI ;
ALN/Q_length_ratio=0.847 ; DESCRIPTION=Transcription
termination factor Rho OS=Isosphaera pallida (strain ATCC
43644 / DSM 9630 / IS1B) GN=rho PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.743"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|A3ZQQ2|A3ZQQ2_9PLAN ;
ALN/Q_length_ratio=0.886 ; DESCRIPTION=Transcription
termination factor Rho OS=Blastopirellula marina DSM 3645
GN=rho PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.955"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DJE7|L0DJE7_SINAD ;
ALN/Q_length_ratio=0.847 ; DESCRIPTION=Transcription
termination factor Rho OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=rho PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.764"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|H5SFS4|H5SFS4_9BACT ;
ALN/Q_length_ratio=0.841 ; DESCRIPTION=Transcription
termination factor Rho OS=uncultured planctomycete GN=rho
PE=3 SV=1 ; EVALUE=1e-179 ; Q/S_length_ratio=1.134"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|A0A0A2HSZ9|A0A0A2HSZ9_9DELT ;
ALN/Q_length_ratio=0.841 ; DESCRIPTION=Transcription
termination factor Rho OS=Desulfobulbus sp. Tol-SR GN=rho
PE=4 SV=1 ; EVALUE=1e-177 ; Q/S_length_ratio=1.180"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|Q1NUJ8|Q1NUJ8_9DELT ;
ALN/Q_length_ratio=0.845 ; DESCRIPTION=Transcription
termination factor Rho OS=delta proteobacterium MLMS-1
GN=rho PE=3 SV=1 ; EVALUE=1e-176 ; Q/S_length_ratio=1.161"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|F8ABC5|F8ABC5_THEID ;
ALN/Q_length_ratio=0.841 ; DESCRIPTION=Transcription
termination factor Rho OS=Thermodesulfatator indicus
(strain DSM 15286 / JCM 11887 / CIR29812) GN=rho PE=3 SV=1
; EVALUE=1e-176 ; Q/S_length_ratio=1.067"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|E8RJH2|E8RJH2_DESPD ;
ALN/Q_length_ratio=0.835 ; DESCRIPTION=Transcription
termination factor Rho OS=Desulfobulbus propionicus
(strain ATCC 33891 / DSM 2032 / 1pr3) GN=rho PE=3 SV=1 ;
EVALUE=1e-176 ; Q/S_length_ratio=1.183"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|A0A081C8X7|A0A081C8X7_9BACT ;
ALN/Q_length_ratio=0.835 ; DESCRIPTION=Transcription
termination factor Rho OS=bacterium UASB270 GN=rho PE=3
SV=1 ; EVALUE=1e-175 ; Q/S_length_ratio=1.131"
/note="Pfam_scan:hit_1 (121..198);
Pfam:PF07497.7:Rho_RNA_bind;
Pfam_type:Domain;HMM_aln_Length:75; HMM_Length:78;
EVALUE:7.4e-29; BITSCORE: 99.2"
/note="Pfam_scan:hit_2 (226..437);
Pfam:PF00006.20:ATP-synt_ab;
Pfam_type:Family;HMM_aln_Length:211; HMM_Length:215;
EVALUE:1.2e-37; BITSCORE: 129.4"
/note="GO_domain:GO:0016887"
/note="GO_domain:GO:0003723"
/note="GO_domain:GO:0043167"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="Enzyme_Code:EC:3.6.1"
/note="Enzyme_Code:EC:3.6.1.3"
/note="Enzyme_Code:EC:3.6.1.15"
BEGIN
1 MPDAKGVEGS PLPRPSLLRA AAAKRPFRKP TDGPAGPVTG APPAPAPVAP PPERIERERP
61 ERVERPRPVH TGSRLDDLYR MPMPELFALA EKEGIREHTG MSRAQLIVGV VRRQIERGEV
121 VRGSGTLEVL PDGYGFLRSQ AHNYLASPED IYVSPSQIRR MSLRTGLVVE GPIRLPIENQ
181 DNFALMQIEL VNNKHPDEGT GVTSFEDLTP LHPNERLRLE SAPDELSMRI VDLITPVGKG
241 QRGLIVAPPR TGKTILLAKM ANAIIRNHPE SYVFVLLVDE RPEEVTEMQR LVNSPNAEVV
301 ASTFDEPPEE HIHVSEIVLE KAKRMVEMKK DVIILLDSIT RLARAHNTEA PGGGKLLSGG
361 LDSNAMQKPK RFFGAARNVE EGGSLTILAT ALVDTGSRMD EVIFEEFKGT GNSELHLDRR
421 LVEKRVYPAI DAVKSGTRKE ELLMHPEEYD KVRILRRVLA DMHPVEAMEM LLNKSRKTKS
481 NMEFLLSMNL G
//