LOCUS VTR92956.1 423 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rnd transporter mfp subunit : RND family
efflux transporter, MFP subunit OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7473 PE=4 SV=1: HlyD protein.
ACCESSION LR593886-2257
PROTEIN_ID VTR92956.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_47580"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DRA3|L0DRA3_SINAD ;
ALN/Q_length_ratio=0.889 ; DESCRIPTION=RND family efflux
transporter, MFP subunit OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7473 PE=4 SV=1 ; EVALUE=1e-120 ;
Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|A0A075JW10|A0A075JW10_9GAMM ;
ALN/Q_length_ratio=0.872 ; DESCRIPTION=RND transporter MFP
subunit OS=Dyella japonica A8 GN=HY57_03015 PE=4 SV=1 ;
EVALUE=5e-81 ; Q/S_length_ratio=1.063"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A0A023NXC3|A0A023NXC3_9GAMM ;
ALN/Q_length_ratio=0.792 ; DESCRIPTION=RND transporter MFP
subunit OS=Dyella jiangningensis GN=CH75_20610 PE=4 SV=1 ;
EVALUE=9e-79 ; Q/S_length_ratio=1.063"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|V5C6H1|V5C6H1_9GAMM ;
ALN/Q_length_ratio=0.882 ; DESCRIPTION=Efflux pump
periplasmic linker BepF OS=Methyloglobulus morosus KoM1
GN=bepF PE=4 SV=1 ; EVALUE=1e-77 ; Q/S_length_ratio=1.068"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|A2SLU3|A2SLU3_METPP ;
ALN/Q_length_ratio=0.856 ; DESCRIPTION=Putative
transmembrane multidrug efflux system transmembrane
protein OS=Methylibium petroleiphilum (strain PM1)
GN=Mpe_A3579 PE=4 SV=1 ; EVALUE=7e-76 ;
Q/S_length_ratio=1.022"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|A0A031GQX4|A0A031GQX4_9BURK ;
ALN/Q_length_ratio=0.846 ; DESCRIPTION=Acriflavine
resistance protein A OS=Janthinobacterium lividum GN=acrA1
PE=4 SV=1 ; EVALUE=2e-75 ; Q/S_length_ratio=1.022"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|A0A0A6DR69|A0A0A6DR69_9BURK ;
ALN/Q_length_ratio=0.846 ; DESCRIPTION=RND transporter MFP
subunit OS=Janthinobacterium lividum GN=NC77_12630 PE=4
SV=1 ; EVALUE=4e-75 ; Q/S_length_ratio=1.022"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|W7W6Q2|W7W6Q2_9BURK ;
ALN/Q_length_ratio=0.846 ; DESCRIPTION=Efflux pump
periplasmic linker BepF OS=Methylibium sp. T29-B GN=bepF_3
PE=4 SV=1 ; EVALUE=5e-75 ; Q/S_length_ratio=0.995"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DGV8|L0DGV8_SINAD ;
ALN/Q_length_ratio=0.842 ; DESCRIPTION=RND family efflux
transporter, MFP subunit OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3860 PE=4 SV=1 ; EVALUE=8e-75 ;
Q/S_length_ratio=1.042"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|A0A024HHK6|A0A024HHK6_PSESB ;
ALN/Q_length_ratio=0.846 ;
DESCRIPTION=Resistance-Nodulation-cell Division (RND)
multidrug efflux membrane fusion protein MexE
OS=Pseudomonas knackmussii B13 GN=mexE PE=4 SV=1 ;
EVALUE=2e-74 ; Q/S_length_ratio=1.032"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|M4WUV1|M4WUV1_PSEDE ;
ALN/Q_length_ratio=0.872 ; DESCRIPTION=RND multidrug
efflux membrane fusion protein MexE OS=Pseudomonas
denitrificans ATCC 13867 GN=H681_10170 PE=4 SV=1 ;
EVALUE=4e-74 ; Q/S_length_ratio=1.029"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|A0A081Y7X9|A0A081Y7X9_9PSED ;
ALN/Q_length_ratio=0.865 ; DESCRIPTION=RND transporter MFP
subunit OS=Pseudomonas sp. AAC GN=FG99_20795 PE=4 SV=1 ;
EVALUE=5e-74 ; Q/S_length_ratio=1.032"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|W5IMC9|W5IMC9_PSEUO ;
ALN/Q_length_ratio=0.839 ; DESCRIPTION=RND transporter MFP
subunit OS=Pseudomonas sp. (strain M1) GN=PM1_0223350 PE=4
SV=1 ; EVALUE=1e-73 ; Q/S_length_ratio=1.032"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|G0A1J1|G0A1J1_METMM ;
ALN/Q_length_ratio=0.816 ; DESCRIPTION=Efflux transporter,
RND family, MFP subunit OS=Methylomonas methanica (strain
MC09) GN=Metme_0440 PE=4 SV=1 ; EVALUE=7e-72 ;
Q/S_length_ratio=1.019"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|H8GKZ1|H8GKZ1_METAL ;
ALN/Q_length_ratio=0.794 ; DESCRIPTION=RND family efflux
transporter, MFP subunit OS=Methylomicrobium album BG8
GN=Metal_2780 PE=4 SV=1 ; EVALUE=1e-71 ;
Q/S_length_ratio=1.012"
/note="Pfam_scan:hit_1 (70..372); Pfam:PF00529.15:HlyD;
Pfam_type:Family;HMM_aln_Length:287; HMM_Length:305;
EVALUE:1.7e-22; BITSCORE: 80.0"
/note="GO_domain:GO:0055085"
/note="GO_domain:GO:0005575"
BEGIN
1 MSARSPGTRH RFRLFGLLVL GTLAGALVGC QRKPPQAAPA VVPTIPVSHP IEREVTDFAE
61 YTGRTDAVES VSVRARVTGE LQAMPFGEGT EVRGPKRLGW ITLYPGDLLF RIDPEPYRAM
121 VDQAEGQLQL YKAQRVLAGL NYEQNKQAYD VGAGSISQLN LDKANIDSAD ARIRTAEAAL
181 KSARLNLAYT EIRAPISGRV SRYYYTPGNL VSENQTLLTT IVSMEKMYGY FDVEERTFQR
241 LLGGSTGTLS TVIVRMAIEG ETGFPHRGKL DFINNQVNPS TGTIALRAVF DNERAKNGMW
301 KLLPGMFVRV RLELGGSYQA ALVVDKAIGS DQGLKFVYVV DAENKVQYRR VKTGALQEDG
361 LRVIDPYKPG TDKEPESGVK PTEWVVVGGL PQLRPRLEIK PEQGAMPTAT SGGDAPPRRP
421 KKQ
//