LOCUS VTR92911.1 183 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma factor : RNA polymerase
sigma factor, sigma-70 family protein OS=Blastopirellula
marina DSM 3645 GN=DSM3645_06149 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2 protein.
ACCESSION LR593886-2212
PROTEIN_ID VTR92911.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_48030"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|A4A074|A4A074_9PLAN ;
ALN/Q_length_ratio=1.060 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family protein OS=Blastopirellula
marina DSM 3645 GN=DSM3645_06149 PE=4 SV=1 ; EVALUE=5e-49
; Q/S_length_ratio=0.897"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|D5SWN0|D5SWN0_PLAL2 ;
ALN/Q_length_ratio=1.055 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Planctomyces limnophilus
(strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290)
GN=Plim_3811 PE=4 SV=1 ; EVALUE=6e-43 ;
Q/S_length_ratio=0.867"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A8TRK4|A8TRK4_9PROT ;
ALN/Q_length_ratio=1.055 ; DESCRIPTION=Sigma-24, ECF
subfamily protein OS=alpha proteobacterium BAL199
GN=BAL199_27396 PE=4 SV=1 ; EVALUE=2e-38 ;
Q/S_length_ratio=0.847"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|G8M1K0|G8M1K0_CLOCD ;
ALN/Q_length_ratio=1.022 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, RpoE OS=Clostridium clariflavum (strain
DSM 19732 / NBRC 101661 / EBR45) GN=Clocl_2649 PE=4 SV=1 ;
EVALUE=2e-36 ; Q/S_length_ratio=0.920"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|A0A085XNB7|A0A085XNB7_9DELT ;
ALN/Q_length_ratio=1.005 ; DESCRIPTION=RNA polymerase
sigma factor OS=Sandaracinus amylolyticus GN=DB32_6849
PE=3 SV=1 ; EVALUE=3e-35 ; Q/S_length_ratio=0.948"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|A6GE74|A6GE74_9DELT ;
ALN/Q_length_ratio=0.951 ; DESCRIPTION=RNA polymerase
sigma-70 factor, ECF subfamily protein OS=Plesiocystis
pacifica SIR-1 GN=PPSIR1_34667 PE=4 SV=1 ; EVALUE=2e-34 ;
Q/S_length_ratio=1.022"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|Q488H2|Q488H2_COLP3 ;
ALN/Q_length_ratio=1.077 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Colwellia psychrerythraea
(strain 34H / ATCC BAA-681) GN=CPS_0794 PE=4 SV=1 ;
EVALUE=6e-32 ; Q/S_length_ratio=0.803"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|C7HEW7|C7HEW7_CLOTM ;
ALN/Q_length_ratio=1.016 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Ruminiclostridium
thermocellum DSM 2360 GN=ClothDRAFT_1226 PE=4 SV=1 ;
EVALUE=4e-31 ; Q/S_length_ratio=0.924"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|D1NIJ7|D1NIJ7_CLOTM ;
ALN/Q_length_ratio=1.016 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Ruminiclostridium
thermocellum JW20 GN=Cther_2288 PE=4 SV=1 ; EVALUE=4e-31 ;
Q/S_length_ratio=0.924"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|W4V8L2|W4V8L2_9FIRM ;
ALN/Q_length_ratio=1.005 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=[Clostridium] straminisolvens JCM 21531
GN=JCM21531_2583 PE=4 SV=1 ; EVALUE=8e-31 ;
Q/S_length_ratio=0.924"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|A3DDU5|A3DDU5_CLOTH ;
ALN/Q_length_ratio=1.016 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Clostridium
thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /
NCIMB 10682 / NRRL B-4536 / VPI 7372) GN=Cthe_0890 PE=4
SV=1 ; EVALUE=9e-31 ; Q/S_length_ratio=0.832"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|H8EK01|H8EK01_CLOTM ;
ALN/Q_length_ratio=1.016 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Ruminiclostridium
thermocellum YS GN=YSBL_0660 PE=4 SV=1 ; EVALUE=9e-31 ;
Q/S_length_ratio=0.832"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|U4MNU9|U4MNU9_CLOTM ;
ALN/Q_length_ratio=1.016 ; DESCRIPTION=ECF subfamily RNA
polymerase sigma-24 factor OS=Ruminiclostridium
thermocellum BC1 GN=CTHBC1_0925 PE=4 SV=1 ; EVALUE=9e-31 ;
Q/S_length_ratio=0.832"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|H8EFB0|H8EFB0_CLOTM ;
ALN/Q_length_ratio=1.016 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Ruminiclostridium
thermocellum AD2 GN=AD2_2263 PE=4 SV=1 ; EVALUE=9e-31 ;
Q/S_length_ratio=0.832"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|E6UQD9|E6UQD9_CLOTL ;
ALN/Q_length_ratio=1.016 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Clostridium
thermocellum (strain DSM 1313 / LMG 6656 / LQ8)
GN=Clo1313_1330 PE=4 SV=1 ; EVALUE=9e-31 ;
Q/S_length_ratio=0.832"
/note="Pfam_scan:hit_1 (24..92);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:69; HMM_Length:71;
EVALUE:5.6e-11; BITSCORE: 41.8"
/note="Pfam_scan:hit_2 (118..171);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:51; HMM_Length:54;
EVALUE:1.2e-16; BITSCORE: 59.8"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MPVSDEADLV SRLRAGDGAA YTLLVRENVG TMTAVACRFF GDTPEANEAV QDALVSAFGS
61 MAAFEGTARL GTWLHRITVN ACLLRLRARK RSRLVPLEND LPTNASEDGA ELSRGETCAR
121 VREGVGQLPE SYRTVIRLRD LEGLSTEETA ARLGTNCGAV KTRLHRARQA LRAILEPQFS
181 NAV
//