LOCUS VTR92902.1 205 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna sigma-24 ecf subfamily : RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Methyloglobulus morosus
KoM1 GN=MGMO_177c00220 PE=4 SV=1: Sigma70_r2: Sigma70_r4_2
protein.
ACCESSION LR593886-2203
PROTEIN_ID VTR92902.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_48120"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|V5DH35|V5DH35_9GAMM ;
ALN/Q_length_ratio=0.878 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Methyloglobulus morosus
KoM1 GN=MGMO_177c00220 PE=4 SV=1 ; EVALUE=6e-48 ;
Q/S_length_ratio=1.090"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|D7DM51|D7DM51_METV0 ;
ALN/Q_length_ratio=0.873 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Methylotenera
versatilis (strain 301) GN=M301_2382 PE=4 SV=1 ;
EVALUE=2e-44 ; Q/S_length_ratio=1.108"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|S7VCN5|S7VCN5_DESML ;
ALN/Q_length_ratio=0.937 ; DESCRIPTION=RNA polymerase
sigma factor OS=Desulfococcus multivorans DSM 2059
GN=dsmv_3802 PE=3 SV=1 ; EVALUE=3e-43 ;
Q/S_length_ratio=1.030"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|M5TJ93|M5TJ93_9PLAN ;
ALN/Q_length_ratio=0.888 ; DESCRIPTION=RNA polymerase
sigma-24 related protein OS=Rhodopirellula sp. SWK7
GN=RRSWK_02040 PE=4 SV=1 ; EVALUE=3e-42 ;
Q/S_length_ratio=1.062"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|M5S980|M5S980_9PLAN ;
ALN/Q_length_ratio=0.932 ; DESCRIPTION=RNA polymerase
sigma-24 related protein OS=Rhodopirellula maiorica SM1
GN=RMSM_00350 PE=4 SV=1 ; EVALUE=8e-42 ;
Q/S_length_ratio=1.046"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|A0A0A0E000|A0A0A0E000_9SPIO ;
ALN/Q_length_ratio=0.912 ; DESCRIPTION=Uncharacterized
protein OS=Spirochaeta sp. JC202 GN=JY97_06525 PE=4 SV=1 ;
EVALUE=1e-41 ; Q/S_length_ratio=1.020"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|C6WYE7|C6WYE7_METML ;
ALN/Q_length_ratio=0.854 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Methylotenera mobilis
(strain JLW8 / ATCC BAA-1282 / DSM 17540) GN=Mmol_1963
PE=4 SV=1 ; EVALUE=3e-41 ; Q/S_length_ratio=1.108"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|R9GY17|R9GY17_9SPHI ;
ALN/Q_length_ratio=0.961 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Arcticibacter svalbardensis
MN12-7 GN=ADIARSV_0405 PE=4 SV=1 ; EVALUE=3e-40 ;
Q/S_length_ratio=1.030"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|E4QJ41|E4QJ41_METS6 ;
ALN/Q_length_ratio=0.888 ; DESCRIPTION=RNA polymerase
sigma factor OS=Methylovorus sp. (strain MP688)
GN=MPQ_1797 PE=3 SV=1 ; EVALUE=6e-40 ;
Q/S_length_ratio=1.096"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|C6X6P6|C6X6P6_METGS ;
ALN/Q_length_ratio=0.888 ; DESCRIPTION=RNA polymerase
sigma factor OS=Methylovorus glucosetrophus (strain
SIP3-4) GN=Msip34_1794 PE=3 SV=1 ; EVALUE=6e-40 ;
Q/S_length_ratio=1.096"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|I0IKL5|I0IKL5_LEPFC ;
ALN/Q_length_ratio=0.912 ; DESCRIPTION=Putative RNA
polymerase sigma factor OS=Leptospirillum ferrooxidans
(strain C2-3) GN=LFE_0085 PE=4 SV=1 ; EVALUE=1e-39 ;
Q/S_length_ratio=1.079"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|Y0KJL7|Y0KJL7_9PROT ;
ALN/Q_length_ratio=0.859 ; DESCRIPTION=RNA polymerase
sigma factor OS=Methylophilaceae bacterium 11
GN=Meth11DRAFT_2245 PE=3 SV=1 ; EVALUE=1e-39 ;
Q/S_length_ratio=1.114"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|A0A099NHG0|A0A099NHG0_9FLAO ;
ALN/Q_length_ratio=0.902 ; DESCRIPTION=RNA polymerase
sigma-70 factor OS=Cellulophaga sp. E6(2014) GN=EL45_04930
PE=4 SV=1 ; EVALUE=3e-39 ; Q/S_length_ratio=1.102"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|A0A0A1D8G5|A0A0A1D8G5_9FLAO ;
ALN/Q_length_ratio=0.902 ; DESCRIPTION=RNA polymerase
sigma-70 factor OS=Cellulophaga baltica NN016038
GN=M667_01540 PE=4 SV=1 ; EVALUE=3e-39 ;
Q/S_length_ratio=1.102"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|G2EBM8|G2EBM8_9FLAO ;
ALN/Q_length_ratio=0.873 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family protein OS=Bizionia
argentinensis JUB59 GN=BZARG_907 PE=4 SV=1 ; EVALUE=3e-39
; Q/S_length_ratio=1.114"
/note="Pfam_scan:hit_1 (19..87);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:69; HMM_Length:71;
EVALUE:1.3e-16; BITSCORE: 59.9"
/note="Pfam_scan:hit_2 (133..186);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:52; HMM_Length:54;
EVALUE:2e-08; BITSCORE: 33.5"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MSKADSSVVS AVPLDPHTWV ERHGDYLYRF AVAHVRRTDA AEDLVQDALL AAWKAQDRFD
61 GAASERTWLT AILKRKVIDW LRKQVRERLA ADPGTGPDRF TDDLFTRRGE WRAPPGLWAR
121 GHPAEVLDRE EFWDALHGCL GKLPVRLHDV FALRYLDEAA SEDVCRELGL TPANFWVMLH
181 RARLRMWWCL SKNWFGTEPQ SGSES
//