LOCUS VTR92761.1 789 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana dead deah box helicase : EcoEI R domain
protein OS=Xanthobacter autotrophicus (strain ATCC BAA-
1158 / Py2) GN=Xaut_0785 PE=4 SV=1: ResIII: Helicase_C:
EcoEI_R_C protein.
ACCESSION LR593886-2062
PROTEIN_ID VTR92761.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_49530"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|S5C4D3|S5C4D3_ALTMA ;
ALN/Q_length_ratio=1.004 ; DESCRIPTION=Type I
site-specific restriction-modification system, R
(Restriction) subunit OS=Alteromonas macleodii str.
'Ionian Sea UM7' GN=I635_20170 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.991"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|W6M8M6|W6M8M6_9GAMM ;
ALN/Q_length_ratio=0.994 ; DESCRIPTION=Type I
site-specific restriction-modification system, R
(Restriction) subunit OS=Candidatus Competibacter
denitrificans Run_A_D11 GN=BN873_370003 PE=4 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=1.003"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M7CF26|M7CF26_MORMO ;
ALN/Q_length_ratio=1.004 ; DESCRIPTION=Type I
restriction-modification system, restriction subunit R
OS=Morganella morganii SC01 GN=C790_03921 PE=4 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=0.991"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|F2G476|F2G476_ALTMD ;
ALN/Q_length_ratio=1.004 ; DESCRIPTION=DEAD/DEAH box
helicase OS=Alteromonas macleodii (strain DSM 17117 / Deep
ecotype) GN=MADE_1020345 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.991"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|M5RPM8|M5RPM8_9PLAN ;
ALN/Q_length_ratio=0.992 ; DESCRIPTION=Type I
restriction-modification system R subunit
OS=Rhodopirellula maiorica SM1 GN=RMSM_01798 PE=4 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=1.004"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|F9ALI8|F9ALI8_VIBCL ;
ALN/Q_length_ratio=1.004 ; DESCRIPTION=Type I
site-specific restriction-modification system, R
(Restriction) subunit OS=Vibrio cholerae HE39
GN=VCHE39_0517 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.991"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|Q7MPU7|Q7MPU7_VIBVY ;
ALN/Q_length_ratio=1.004 ; DESCRIPTION=Type I
site-specific restriction-modification system, R
(Restriction) subunit OS=Vibrio vulnificus (strain YJ016)
GN=VV0265 PE=1 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.966"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|K5NVY7|K5NVY7_VIBCL ;
ALN/Q_length_ratio=1.004 ; DESCRIPTION=Type III
restriction enzyme, res subunit OS=Vibrio cholerae HE-40
GN=VCHE40_0188 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.991"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|J1YF29|J1YF29_VIBCL ;
ALN/Q_length_ratio=1.004 ; DESCRIPTION=Type I
site-specific restriction-modification system, R
(Restriction) subunit OS=Vibrio cholerae HE-45
GN=VCHE45_0323 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.991"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|F5ZGC0|F5ZGC0_ALTSS ;
ALN/Q_length_ratio=1.004 ; DESCRIPTION=Type I
site-specific restriction-modification system, R
(Restriction) subunit OS=Alteromonas sp. (strain SN2)
GN=ambt_22005 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.991"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|S5CJW7|S5CJW7_ALTMA ;
ALN/Q_length_ratio=1.004 ; DESCRIPTION=Type I
site-specific restriction-modification system, R
(Restriction) subunit OS=Alteromonas macleodii str.
'Ionian Sea UM4b' GN=I636_19315 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.991"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|K5P6W5|K5P6W5_VIBCL ;
ALN/Q_length_ratio=1.004 ; DESCRIPTION=Type III
restriction enzyme, res subunit OS=Vibrio cholerae HE-46
GN=VCHE46_0188 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.991"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0BD11|L0BD11_VIBFL ;
ALN/Q_length_ratio=1.004 ; DESCRIPTION=Type I
restriction-modification enzyme, restriction subunit
OS=Vibrio fluvialis GN=hsdR PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.991"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|K7RHY1|K7RHY1_ALTMA ;
ALN/Q_length_ratio=1.004 ; DESCRIPTION=Type I
site-specific restriction-modification system, R
(Restriction) subunit OS=Alteromonas macleodii AltDE1
GN=amad1_20180 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.991"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|A7IDE3|A7IDE3_XANP2 ;
ALN/Q_length_ratio=1.003 ; DESCRIPTION=EcoEI R domain
protein OS=Xanthobacter autotrophicus (strain ATCC
BAA-1158 / Py2) GN=Xaut_0785 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.997"
/note="Pfam_scan:hit_1 (154..322); Pfam:PF04851.10:ResIII;
Pfam_type:Family;HMM_aln_Length:179; HMM_Length:184;
EVALUE:6.1e-28; BITSCORE: 97.9"
/note="Pfam_scan:hit_2 (461..527);
Pfam:PF00271.26:Helicase_C;
Pfam_type:Family;HMM_aln_Length:47; HMM_Length:78;
EVALUE:2.2e-05; BITSCORE: 24.2"
/note="Pfam_scan:hit_3 (632..787);
Pfam:PF08463.5:EcoEI_R_C;
Pfam_type:Family;HMM_aln_Length:154; HMM_Length:164;
EVALUE:4.9e-28; BITSCORE: 98.0"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0043167"
/note="GO_domain:GO:0006259"
BEGIN
1 MNEAETCRTL VRPKLETAGW EANGDTFYRE QIGITAGRIV LPGGKPRRLK KKIPDFLLYF
61 TRDVLLAVVE AKSNIRPAGD GLQQAKDYAQ ILGLYFAFAT NGTKVIEYDY FTHTETERAD
121 FPTPTELWQR YLKGMSLAPG YTDALLVPDY HWPDKRPRYF QRVAIERALQ AIVGKQQRRC
181 LLTLATGTGK TTVAFQICWK LWSAYWNAKG EPKRRPRILF LADRNKLVDD PKDRDFAPFG
241 DTRLRIQGKA EKGREMYFAL YQSLAGADGV PGLYQQYARD YFDLIVIDEC HRGSANDEGR
301 WREILDYFEP AYQLGMTATP LREENKDSYL YFGNPLYTYS LKQGIEDGFL APYRVHRIVT
361 SFDAIGWRPN KGQKDKDKNP IPDRLFQTKD FERVISIEAR NKAVAVHLTN FLKRNGRYDK
421 TIVFCADQDH ADIMRQELHN LNKDLAPAAV QVGSSYVARV TADEGERGAG FLDDFQDLEK
481 DFPVILTTSQ LLTTGVDAPT CRNVVLFRPV NSMTEFKQII GRGTRCREDK GKLFFNILDY
541 TGSATEKFAD PDFDGQPPEV TAEEIDEYGQ TVATETTTNP EPDEDFNVPA GILPEQTGGR
601 VKLRVHGGPG WIDTEVTYDL DASGKQLRVG DMPRFTAEEV RDLFADADAL RTQWANPEGR
661 KAVLEELDQR AIDLRVLAAE VGEPDADPFD LLCHLAYKSP LLTRKQRADK LRASAAAFLA
721 GFGPPARPVL EALIDKYVEH GIGEFELPDA LKVPPLSAFG PPGEIVARFS GPSQLLAAVD
781 ALQEKLYAG
//