LOCUS VTR92651.1 468 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_0102 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2 protein.
ACCESSION LR593886-1952
PROTEIN_ID VTR92651.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_50630"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.534 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=2e-38 ;
Q/S_length_ratio=0.836"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DHB8|L0DHB8_SINAD ;
ALN/Q_length_ratio=0.543 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3834 PE=4 SV=1 ; EVALUE=1e-35 ;
Q/S_length_ratio=0.845"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.551 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=8e-35 ;
Q/S_length_ratio=0.762"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0D7L2|L0D7L2_SINAD ;
ALN/Q_length_ratio=0.577 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0185 PE=4 SV=1 ; EVALUE=4e-34 ;
Q/S_length_ratio=0.934"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.389 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=5e-34 ;
Q/S_length_ratio=0.971"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DKL4|L0DKL4_SINAD ;
ALN/Q_length_ratio=0.474 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5058 PE=4 SV=1 ; EVALUE=1e-33 ;
Q/S_length_ratio=0.488"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.571 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=3e-33 ;
Q/S_length_ratio=0.524"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.609 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=9e-33 ;
Q/S_length_ratio=1.061"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.400 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=1e-32 ;
Q/S_length_ratio=1.467"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.536 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=2e-32 ;
Q/S_length_ratio=0.818"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DQA3|L0DQA3_SINAD ;
ALN/Q_length_ratio=0.603 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6979 PE=4 SV=1 ; EVALUE=3e-32 ;
Q/S_length_ratio=1.052"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DR85|L0DR85_SINAD ;
ALN/Q_length_ratio=0.588 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7453 PE=4 SV=1 ; EVALUE=1e-31 ;
Q/S_length_ratio=0.784"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DT29|L0DT29_SINAD ;
ALN/Q_length_ratio=0.429 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7487 PE=4 SV=1 ; EVALUE=2e-31 ;
Q/S_length_ratio=0.940"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.596 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=4e-31 ;
Q/S_length_ratio=0.381"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DQ81|L0DQ81_SINAD ;
ALN/Q_length_ratio=0.536 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7511 PE=4 SV=1 ; EVALUE=5e-31 ;
Q/S_length_ratio=0.542"
/note="Pfam_scan:hit_1 (41..108);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:67; HMM_Length:71;
EVALUE:1.2e-09; BITSCORE: 37.6"
/note="Pfam_scan:hit_2 (132..185);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:51; HMM_Length:54;
EVALUE:4e-14; BITSCORE: 51.8"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MSRRLLLRLL ASTPTAADHV ADAELLRRFV TSNDSAALEL VARRHADAVW ATCRRTLRSE
61 ADAEDAFQAT FLALVRKAKT INAPCVGGWL HRVAVNAALK LRERAARSSP LEWNQVDSIP
121 AASAPPTDTE RAIAVHEELA RLPERERLPV VLCDLEGLSH ADAAKSLGWP IGTVSGRLSR
181 ARAKLRERLA HRGLTPAAVL LSTLTTPPHL TANILSLTTG VVPPAVASLT EGVLVMLKTT
241 NWTWAASVGI AGLFGVGSVI ALASGDGNGL APLPGIALAP VPVAVDNPAP AKDKPADEKW
301 IQGQTTGTPA IPPTAFPELA LPEPDPNDLE KRKAAFEKLC PRLTGGIVLK IEATDNTLRK
361 LLKARLYQGT LEFQRFQEAL EIEGPREADV PLTYDCLSDM QATVTELWAK EPKELIPWLE
421 ELLILAKKLE RSTHLRVEAG AIRPMNLNHA IRYRLALEAA LWKVKNGK
//