LOCUS VTR92605.1 272 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma factor : RNA polymerase
sigma factor OS=uncultured planctomycete GN=HGMM_F09D09C22
PE=3 SV=1: Sigma70_r1_2: Sigma70_r2: Sigma70_r3: Sigma70_r4
protein.
ACCESSION LR593886-1906
PROTEIN_ID VTR92605.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_51090"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|H5SCE2|H5SCE2_9BACT ;
ALN/Q_length_ratio=0.985 ; DESCRIPTION=RNA polymerase
sigma factor OS=uncultured planctomycete GN=HGMM_F09D09C22
PE=3 SV=1 ; EVALUE=1e-129 ; Q/S_length_ratio=0.978"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|D2R4L7|D2R4L7_PIRSD ;
ALN/Q_length_ratio=0.967 ; DESCRIPTION=RNA polymerase
sigma factor OS=Pirellula staleyi (strain ATCC 27377 / DSM
6068 / ICPB 4128) GN=Psta_2413 PE=3 SV=1 ; EVALUE=1e-126 ;
Q/S_length_ratio=0.850"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|M5S4R5|M5S4R5_9PLAN ;
ALN/Q_length_ratio=0.982 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula maiorica SM1 GN=RMSM_01891
PE=3 SV=1 ; EVALUE=1e-124 ; Q/S_length_ratio=0.880"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|E8R3D5|E8R3D5_ISOPI ;
ALN/Q_length_ratio=0.967 ; DESCRIPTION=RNA polymerase
sigma factor OS=Isosphaera pallida (strain ATCC 43644 /
DSM 9630 / IS1B) GN=Isop_3080 PE=3 SV=1 ; EVALUE=1e-122 ;
Q/S_length_ratio=0.982"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|F0SM83|F0SM83_PLABD ;
ALN/Q_length_ratio=0.971 ; DESCRIPTION=RNA polymerase
sigma factor OS=Planctomyces brasiliensis (strain ATCC
49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448)
GN=Plabr_3441 PE=3 SV=1 ; EVALUE=1e-121 ;
Q/S_length_ratio=0.951"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DCG0|L0DCG0_SINAD ;
ALN/Q_length_ratio=0.967 ; DESCRIPTION=RNA polymerase
sigma factor OS=Singulisphaera acidiphila (strain ATCC
BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_2237
PE=3 SV=1 ; EVALUE=1e-120 ; Q/S_length_ratio=0.978"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|M5TYZ2|M5TYZ2_9PLAN ;
ALN/Q_length_ratio=0.974 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula sallentina SM41
GN=RSSM_04131 PE=3 SV=1 ; EVALUE=1e-119 ;
Q/S_length_ratio=0.904"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|A6CCQ4|A6CCQ4_9PLAN ;
ALN/Q_length_ratio=0.978 ; DESCRIPTION=RNA polymerase
sigma factor OS=Planctomyces maris DSM 8797
GN=PM8797T_32290 PE=3 SV=1 ; EVALUE=1e-119 ;
Q/S_length_ratio=0.975"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M5TRA7|M5TRA7_9PLAN ;
ALN/Q_length_ratio=0.974 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula sp. SWK7 GN=RRSWK_01212
PE=3 SV=1 ; EVALUE=1e-117 ; Q/S_length_ratio=0.886"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|A3ZL58|A3ZL58_9PLAN ;
ALN/Q_length_ratio=0.985 ; DESCRIPTION=RNA polymerase
sigma factor OS=Blastopirellula marina DSM 3645
GN=DSM3645_08837 PE=3 SV=1 ; EVALUE=1e-116 ;
Q/S_length_ratio=0.919"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|D5SWU8|D5SWU8_PLAL2 ;
ALN/Q_length_ratio=0.960 ; DESCRIPTION=RNA polymerase
sigma factor OS=Planctomyces limnophilus (strain ATCC
43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_1616 PE=3 SV=1
; EVALUE=1e-114 ; Q/S_length_ratio=0.938"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M2AEJ8|M2AEJ8_9PLAN ;
ALN/Q_length_ratio=0.993 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula europaea 6C GN=RE6C_03726
PE=3 SV=1 ; EVALUE=1e-111 ; Q/S_length_ratio=0.824"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|F2AYB9|F2AYB9_RHOBT ;
ALN/Q_length_ratio=0.993 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula baltica WH47
GN=RBWH47_05715 PE=3 SV=1 ; EVALUE=1e-111 ;
Q/S_length_ratio=0.824"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L7CG28|L7CG28_RHOBT ;
ALN/Q_length_ratio=0.993 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula baltica SWK14
GN=RBSWK_03282 PE=3 SV=1 ; EVALUE=1e-111 ;
Q/S_length_ratio=0.824"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|M5SE18|M5SE18_9PLAN ;
ALN/Q_length_ratio=0.993 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula europaea SH398
GN=RESH_03548 PE=3 SV=1 ; EVALUE=1e-111 ;
Q/S_length_ratio=0.824"
/note="Pfam_scan:hit_1 (10..44);
Pfam:PF00140.15:Sigma70_r1_2;
Pfam_type:Family;HMM_aln_Length:32; HMM_Length:37;
EVALUE:1.2e-06; BITSCORE: 28.0"
/note="Pfam_scan:hit_2 (47..117);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:65; HMM_Length:71;
EVALUE:8.6e-18; BITSCORE: 63.7"
/note="Pfam_scan:hit_3 (126..203);
Pfam:PF04539.11:Sigma70_r3;
Pfam_type:Family;HMM_aln_Length:76; HMM_Length:78;
EVALUE:7.5e-10; BITSCORE: 38.5"
/note="Pfam_scan:hit_4 (215..268);
Pfam:PF04545.11:Sigma70_r4;
Pfam_type:Domain;HMM_aln_Length:47; HMM_Length:50;
EVALUE:2e-19; BITSCORE: 68.6"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0030154"
/note="GO_domain:GO:0048646"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MRTENNARTA FSTYLSEIDH TPLLSAPEER ELGARVLTGD AQARDRMVRA NLRLVVNIAR
61 GYTGKGLALD DLVSEGNMGL LRAVEGFEPS MNTRFSTYAS YWIKQSIKRA IVNTAKTIRI
121 PAYMAELLTK WRRATNQLSD ELGRPPAHDE IAKFLGLSKK KLAIIKKAIR VANAGSQADQ
181 GDAGWSIEEM LMDARSDTPE SEMGKSDDLK QVLHLLDKMD PREATVLRMR FGLNDEEPRT
241 LKEIGECLGL TRERVRQIEN EALTKLSDGM SV
//