LOCUS VTR92599.1 742 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana atp-dependent dna helicase : ATP-dependent
DNA helicase RecQ OS=Rhodopirellula baltica SH28 GN=RBSH_06099
PE=4 SV=1: DEAD: Helicase_C: RQC: HRDC: HTH_40 protein.
ACCESSION LR593886-1900
PROTEIN_ID VTR92599.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_51150"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L7CQW5|L7CQW5_RHOBT ;
ALN/Q_length_ratio=0.953 ; DESCRIPTION=ATP-dependent DNA
helicase RecQ:ATP-requiring DNA helicase RecQ
OS=Rhodopirellula baltica SWK14 GN=RBSWK_00071 PE=4 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=0.996"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|F2AKT3|F2AKT3_RHOBT ;
ALN/Q_length_ratio=0.953 ; DESCRIPTION=ATP-dependent DNA
helicase RecQ OS=Rhodopirellula baltica WH47
GN=RBWH47_01497 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.996"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M5TCN4|M5TCN4_9PLAN ;
ALN/Q_length_ratio=0.966 ; DESCRIPTION=ATP-dependent DNA
helicase RecQ OS=Rhodopirellula sp. SWK7 GN=RRSWK_04246
PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.992"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|M5SJS4|M5SJS4_9PLAN ;
ALN/Q_length_ratio=0.953 ; DESCRIPTION=ATP-dependent DNA
helicase RecQ OS=Rhodopirellula europaea SH398
GN=RESH_01397 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.996"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|M2B9F6|M2B9F6_9PLAN ;
ALN/Q_length_ratio=0.953 ; DESCRIPTION=ATP-dependent DNA
helicase RecQ OS=Rhodopirellula europaea 6C GN=RE6C_00432
PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.996"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|Q1PXL3|Q1PXL3_9BACT ;
ALN/Q_length_ratio=0.946 ; DESCRIPTION=Strongly similar to
ATP-dependent DNA helicase OS=Candidatus Kuenenia
stuttgartiensis GN=recQ PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.961"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|D5SUL1|D5SUL1_PLAL2 ;
ALN/Q_length_ratio=0.969 ; DESCRIPTION=ATP-dependent DNA
helicase RecQ OS=Planctomyces limnophilus (strain ATCC
43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_1229 PE=4 SV=1
; EVALUE=0.0 ; Q/S_length_ratio=0.953"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|A6CDB8|A6CDB8_9PLAN ;
ALN/Q_length_ratio=0.807 ; DESCRIPTION=ATP-dependent DNA
helicase RecQ OS=Planctomyces maris DSM 8797
GN=PM8797T_30896 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.214"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|F0SFT0|F0SFT0_PLABD ;
ALN/Q_length_ratio=0.962 ; DESCRIPTION=ATP-dependent DNA
helicase RecQ OS=Planctomyces brasiliensis (strain ATCC
49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448)
GN=Plabr_3960 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.001"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|A3ZQY1|A3ZQY1_9PLAN ;
ALN/Q_length_ratio=0.973 ; DESCRIPTION=ATP-dependent DNA
helicase RecQ OS=Blastopirellula marina DSM 3645
GN=DSM3645_20922 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.008"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|Q7UR05|Q7UR05_RHOBA ;
ALN/Q_length_ratio=0.953 ; DESCRIPTION=ATP-dependent DNA
helicase RecQ OS=Rhodopirellula baltica (strain SH1)
GN=recQ PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.991"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|M5TZY2|M5TZY2_9PLAN ;
ALN/Q_length_ratio=0.966 ; DESCRIPTION=ATP-dependent DNA
helicase RecQ OS=Rhodopirellula sallentina SM41
GN=RSSM_03965 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.939"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|D5MJB5|D5MJB5_9BACT ;
ALN/Q_length_ratio=0.795 ; DESCRIPTION=ATP-dependent DNA
helicase RecQ OS=Candidatus Methylomirabilis oxyfera
GN=recQ PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.193"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|M5RP31|M5RP31_9PLAN ;
ALN/Q_length_ratio=0.946 ; DESCRIPTION=ATP-dependent DNA
helicase RecQ OS=Rhodopirellula maiorica SM1 GN=RMSM_02027
PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.001"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|K5DYV9|K5DYV9_RHOBT ;
ALN/Q_length_ratio=0.953 ; DESCRIPTION=ATP-dependent DNA
helicase RecQ OS=Rhodopirellula baltica SH28 GN=RBSH_06099
PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.996"
/note="Pfam_scan:hit_1 (25..189); Pfam:PF00270.24:DEAD;
Pfam_type:Domain;HMM_aln_Length:165; HMM_Length:169;
EVALUE:6.4e-18; BITSCORE: 64.8"
/note="Pfam_scan:hit_2 (252..329);
Pfam:PF00271.26:Helicase_C;
Pfam_type:Family;HMM_aln_Length:75; HMM_Length:78;
EVALUE:1.8e-17; BITSCORE: 62.9"
/note="Pfam_scan:hit_3 (416..518); Pfam:PF09382.5:RQC;
Pfam_type:Domain;HMM_aln_Length:101; HMM_Length:106;
EVALUE:1.1e-23; BITSCORE: 82.9"
/note="Pfam_scan:hit_4 (541..608); Pfam:PF00570.18:HRDC;
Pfam_type:Domain;HMM_aln_Length:66; HMM_Length:68;
EVALUE:1.6e-19; BITSCORE: 69.3"
/note="Pfam_scan:hit_5 (646..736); Pfam:PF14493.1:HTH_40;
Pfam_type:Domain;HMM_aln_Length:88; HMM_Length:91;
EVALUE:1.1e-13; BITSCORE: 51.2"
/note="GO_domain:GO:0016887"
/note="GO_domain:GO:0043167"
/note="GO_domain:GO:0004386"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0005694"
/note="GO_domain:GO:0006259"
/note="GO_domain:GO:0006950"
/note="Enzyme_Code:EC:3.6.1"
/note="Enzyme_Code:EC:3.6.1.3"
/note="Enzyme_Code:EC:3.6.1.15"
BEGIN
1 MPAPAPLPPA LFAAVARHWG FSSLRPIQEQ AIRASLAGRD SLVVMPTGGG KSLCFQAPAV
61 VRGGLTVVIS PLIALMKDQV DNLTRIGVPA ARLDSTLNAA ERASTAEGIR NGTTRLVFTS
121 PERLVNTDVF RMLQNAGANT IAVDEAHCVS HWGHDFRPEY RQLARLREFF PGAAVHAYTA
181 TATEQVRRDI AQQLGLKQPE ILVGNFDRPN LIFRVLPRLD LQTQVREVLN RHAGDAGIVY
241 CLRRKDVDEM TTALKAAGYR ALPYHAGMDN ESRRATQEAF AAEEADIVVA TVAFGMGIDR
301 SNVRFVVHAA MPKTIEHYQQ ETGRAGRDGL QSECVLLHSG ADFVSLKAII EKSAEEAQTA
361 AEYVTASIKH LDEMARYCRG AVCRHKALVQ HFGQTYDAPN CGACDLCLGD TQEVPDGVTV
421 AKKILSCVAR VKESFGIAHV IDVLRGADTA TIRARGHHEL STHGLLKSVP KADLRDWVYQ
481 LIGQDVLVQS GDEYPLLKLN PASWAVMNGK QMVRLIQLAR REKRGSSAAS AQPFALPAGA
541 DAKLFEALRQ LRRQEASRAG VKPEQVFPDT VLAEMARGRP TTEDALRRIS GVGDYRLQSY
601 GRAFLKAIIA YCLRTGLMND VPLPKSALAP RTAPVALPPA TTKPGGKKEL AFKMFRAGAA
661 ITDVVNKTEL VAATITDYLA EFVRTEKPAS IFGWVPEDVC ERVAAAAEIH GTAKLKPVFL
721 ELNGEVSYDA IRVVFALLDT QA
//