LOCUS VTR92582.1 197 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase ecf-type sigma factor
: RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera
acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454
/ MOB10) GN=Sinac_0328 PE=4 SV=1: Sigma70_r2: Sigma70_r4_2
protein.
ACCESSION LR593886-1883
PROTEIN_ID VTR92582.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_51320"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0D7Z3|L0D7Z3_SINAD ;
ALN/Q_length_ratio=0.904 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0328 PE=4 SV=1 ; EVALUE=5e-48 ;
Q/S_length_ratio=1.005"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|X0X0E5|X0X0E5_9ZZZZ ;
ALN/Q_length_ratio=0.873 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S01H1_S33681 (Fragment) OS=marine
sediment metagenome GN=S01H1_72621 PE=4 SV=1 ;
EVALUE=4e-38 ; Q/S_length_ratio=1.015"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|E8R645|E8R645_ISOPI ;
ALN/Q_length_ratio=0.817 ; DESCRIPTION=RNA polymerase
sigma factor OS=Isosphaera pallida (strain ATCC 43644 /
DSM 9630 / IS1B) GN=Isop_0143 PE=3 SV=1 ; EVALUE=2e-37 ;
Q/S_length_ratio=0.887"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|B9XG21|B9XG21_PEDPL ;
ALN/Q_length_ratio=0.964 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Pedosphaera parvula
(strain Ellin514) GN=Cflav_PD3900 PE=4 SV=1 ; EVALUE=1e-32
; Q/S_length_ratio=0.985"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|B4CW59|B4CW59_9BACT ;
ALN/Q_length_ratio=0.964 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Chthoniobacter flavus
Ellin428 GN=CfE428DRAFT_0896 PE=4 SV=1 ; EVALUE=2e-31 ;
Q/S_length_ratio=0.925"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|D0LU56|D0LU56_HALO1 ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Haliangium ochraceum
(strain DSM 14365 / JCM 11303 / SMP-2) GN=Hoch_4931 PE=4
SV=1 ; EVALUE=3e-30 ; Q/S_length_ratio=0.912"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|F6B7H3|F6B7H3_DESCC ;
ALN/Q_length_ratio=0.929 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Desulfotomaculum
carboxydivorans (strain DSM 14880 / VKM B-2319 / CO-1-SRB)
GN=Desca_1679 PE=4 SV=1 ; EVALUE=4e-30 ;
Q/S_length_ratio=0.995"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|Q67K53|Q67K53_SYMTH ;
ALN/Q_length_ratio=0.939 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Symbiobacterium thermophilum
(strain T / IAM 14863) GN=STH2962 PE=4 SV=1 ; EVALUE=5e-29
; Q/S_length_ratio=0.970"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|A4J6U3|A4J6U3_DESRM ;
ALN/Q_length_ratio=0.939 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, RpoE OS=Desulfotomaculum reducens
(strain MI-1) GN=Dred_2286 PE=4 SV=1 ; EVALUE=1e-28 ;
Q/S_length_ratio=0.985"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|A0A098UAC9|A0A098UAC9_9BURK ;
ALN/Q_length_ratio=0.980 ; DESCRIPTION=RNA polymerase
sigma factor OS=Massilia sp. JS1662 GN=IA69_13225 PE=4
SV=1 ; EVALUE=2e-28 ; Q/S_length_ratio=0.860"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|H0TFP3|H0TFP3_9BRAD ;
ALN/Q_length_ratio=0.888 ; DESCRIPTION=RNA polymerase
sigma factor OS=Bradyrhizobium sp. STM 3843
GN=BRAS3843_1330046 PE=3 SV=1 ; EVALUE=2e-28 ;
Q/S_length_ratio=0.842"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|K8EC83|K8EC83_9FIRM ;
ALN/Q_length_ratio=0.934 ; DESCRIPTION=RNA polymerase
sigma-H factor OS=Desulfotomaculum hydrothermale Lam5 =
DSM 18033 GN=algU PE=4 SV=1 ; EVALUE=1e-27 ;
Q/S_length_ratio=0.995"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|Q67KY4|Q67KY4_SYMTH ;
ALN/Q_length_ratio=0.934 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Symbiobacterium thermophilum
(strain T / IAM 14863) GN=STH2677 PE=4 SV=1 ; EVALUE=1e-27
; Q/S_length_ratio=0.995"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|B9XS45|B9XS45_PEDPL ;
ALN/Q_length_ratio=0.959 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Pedosphaera parvula
(strain Ellin514) GN=Cflav_PD0456 PE=4 SV=1 ; EVALUE=2e-27
; Q/S_length_ratio=0.912"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|J5PN65|J5PN65_9RHOB ;
ALN/Q_length_ratio=0.893 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodovulum sp. PH10 GN=A33M_2703 PE=3 SV=1
; EVALUE=7e-27 ; Q/S_length_ratio=1.026"
/note="Pfam_scan:hit_1 (33..103);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:69; HMM_Length:71;
EVALUE:1.9e-17; BITSCORE: 62.5"
/note="Pfam_scan:hit_2 (134..187);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:52; HMM_Length:54;
EVALUE:4.5e-15; BITSCORE: 54.8"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MLIAALPTPP APITDDALLA RFATGDRTAL DDLFRRYRGV AYRVAYRLLG READALDAVQ
61 DGFVNALTHL DRFGGRSSFK TWLLRVVCNA ALDIGRQRKR NERVPQVPRG FSPDGFGADD
121 LPPAETNLVR SDLRRVIDAA LARLPDVQRQ TFVLHVEGEL TYREVADALG ISIGTVMSRL
181 FYARQKLKDL LAAYQQP
//