LOCUS VTR92531.1 957 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : Uncultured bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1: Sigma70_r2: Sigma70_r4_2
protein.
ACCESSION LR593886-1832
PROTEIN_ID VTR92531.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_51830"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|A0A090KPX2|A0A090KPX2_9BACT ;
ALN/Q_length_ratio=0.986 ; DESCRIPTION=Uncultured
bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1 ; EVALUE=4e-69 ;
Q/S_length_ratio=0.826"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.279 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=1e-42 ;
Q/S_length_ratio=1.559"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DHB8|L0DHB8_SINAD ;
ALN/Q_length_ratio=0.266 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3834 PE=4 SV=1 ; EVALUE=1e-41 ;
Q/S_length_ratio=1.727"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0D7L2|L0D7L2_SINAD ;
ALN/Q_length_ratio=0.371 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0185 PE=4 SV=1 ; EVALUE=1e-38 ;
Q/S_length_ratio=1.910"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.187 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=2e-38 ;
Q/S_length_ratio=1.709"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DPR4|L0DPR4_SINAD ;
ALN/Q_length_ratio=0.254 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6601 PE=4 SV=1 ; EVALUE=4e-38 ;
Q/S_length_ratio=1.579"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.287 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=2e-36 ;
Q/S_length_ratio=3.000"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.247 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=7e-36 ;
Q/S_length_ratio=2.257"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.290 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=1e-35 ;
Q/S_length_ratio=2.170"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.224 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=2e-35 ;
Q/S_length_ratio=0.780"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.229 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=2e-34 ;
Q/S_length_ratio=0.868"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DCW6|L0DCW6_SINAD ;
ALN/Q_length_ratio=0.248 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2795 PE=4 SV=1 ; EVALUE=3e-34 ;
Q/S_length_ratio=2.486"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DIK4|L0DIK4_SINAD ;
ALN/Q_length_ratio=0.195 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4459 PE=4 SV=1 ; EVALUE=5e-34 ;
Q/S_length_ratio=0.978"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.251 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=2e-33 ;
Q/S_length_ratio=1.673"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.187 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=2e-32 ;
Q/S_length_ratio=1.985"
/note="Pfam_scan:hit_1 (42..110);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:58; HMM_Length:71;
EVALUE:9.9e-10; BITSCORE: 37.8"
/note="Pfam_scan:hit_2 (136..188);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:51; HMM_Length:54;
EVALUE:1.6e-12; BITSCORE: 46.6"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MTVSNHAMPA RFLHLITADP VPDADLLSRF IRSRDGAAFA ALVERHGPMV LRVCRRTLWD
61 AHAAEDAFQA TFLALIRGAH RVRETASVAA WLYGAAVRIS LKARGAATRA QRTPDPLPTR
121 CSPDPLAEMT GRELVSAIDE ELARLPDRCR AAIILCGLEG LSQDEAARRL GWSVAAVRGQ
181 LERGRERLRV RLAQRGLTLS VGLGSLFFGA AHAVVPPRLS ARAVELATRG TVPPSVAALA
241 AGMAPFHTTW SAVAVALVVL AVGGMTALGY GNRTPQTSSP QPPEAATAFA RPIDPLGDSR
301 PEGLISPLAA APPAKTDRYG DPLPAGALMR LGTLRGAATI TSFGVAADGS VLTVGSEGDL
361 CLWHPGSDAP EPAVRLPVKV PEEWYGIVQS CASPDAKRVA CSVPESVIVY ERRGEKPPVE
421 IGRFKFPRVE SLAFTPNGMG LVVVTRGDKW SVHLSDIKAG TSHVLGSGLN HVAGVEFSAD
481 GRRVAVNTWD ELLVFDVGTG KELARWSVDG FKLATVALNT AGDTVAVRVY RPETEEYLDV
541 RFFETKTGKV QPGAVSTDGG AWVTFAPDGK TVLIGDTRGV RWWDPIAGKV LRRFDGAAGD
601 LSYGTTPAAR FTPDGKVLVA TTGRFLFRWD ARTGEPLFPE VHAGAHFGRV AALGVSADGT
661 RYATGTSSRI RVWDAKSGKP IATVPSTYLW PHNLEFAPDG KTLFAPGGGD VVQWDAATGK
721 ELRRFAVDPK EPRPTVTIGV RLTEDGKVLT GVTLARVNGT LTPVHTTWDA GNGRRQFTKR
781 LNPFEWSARH YRINFSPNAL HASLHGDVFL TADGPTKGLL PPRTLGPGFD AGAFSSDGGR
841 IAFTYIEDGD PQGVMRGVVY GVATGVKLCD LPAGSGGRVA LNSDGTVLAA AGLTDLTMWD
901 TNTGELLARY RSPPAQKGIA VCSFAEVMRF TTDGTMLITG HADTTALVWP VPPRPAK
//