LOCUS VTR92461.1 193 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana extracytoplasmic sigma factor ecf :
Similar to extracytoplasmic sigma factor ECF OS=Rhodopirellula
baltica (strain SH1) GN=RB12313 PE=4 SV=1: Sigma70_ECF
protein.
ACCESSION LR593886-1762
PROTEIN_ID VTR92461.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_52530"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|Q7UIV2|Q7UIV2_RHOBA ;
ALN/Q_length_ratio=0.907 ; DESCRIPTION=Similar to
extracytoplasmic sigma factor ECF OS=Rhodopirellula
baltica (strain SH1) GN=RB12313 PE=4 SV=1 ; EVALUE=7e-36 ;
Q/S_length_ratio=1.027"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|F2ANU6|F2ANU6_RHOBT ;
ALN/Q_length_ratio=0.819 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Rhodopirellula baltica WH47
GN=RBWH47_01061 PE=4 SV=1 ; EVALUE=3e-35 ;
Q/S_length_ratio=1.177"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L7CB75|L7CB75_RHOBT ;
ALN/Q_length_ratio=0.819 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula baltica SWK14
GN=RBSWK_05158 PE=4 SV=1 ; EVALUE=3e-35 ;
Q/S_length_ratio=1.177"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|M2AYB5|M2AYB5_9PLAN ;
ALN/Q_length_ratio=0.819 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula europaea 6C
GN=RE6C_01564 PE=4 SV=1 ; EVALUE=3e-35 ;
Q/S_length_ratio=1.021"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|K5DE97|K5DE97_RHOBT ;
ALN/Q_length_ratio=0.819 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula baltica SH28
GN=RBSH_03941 PE=4 SV=1 ; EVALUE=3e-35 ;
Q/S_length_ratio=1.177"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|M5RVM0|M5RVM0_9PLAN ;
ALN/Q_length_ratio=0.819 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula maiorica SM1
GN=RMSM_03630 PE=4 SV=1 ; EVALUE=5e-35 ;
Q/S_length_ratio=0.995"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|A3ZY80|A3ZY80_9PLAN ;
ALN/Q_length_ratio=0.865 ; DESCRIPTION=Uncharacterized
protein OS=Blastopirellula marina DSM 3645
GN=DSM3645_26749 PE=4 SV=1 ; EVALUE=6e-35 ;
Q/S_length_ratio=1.038"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M5S6A5|M5S6A5_9PLAN ;
ALN/Q_length_ratio=0.819 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula europaea SH398
GN=RESH_02334 PE=4 SV=1 ; EVALUE=9e-35 ;
Q/S_length_ratio=1.021"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|A3ZZC0|A3ZZC0_9PLAN ;
ALN/Q_length_ratio=0.819 ; DESCRIPTION=Extracytoplasmic
sigma factor ECF-like protein OS=Blastopirellula marina
DSM 3645 GN=DSM3645_18701 PE=4 SV=1 ; EVALUE=3e-34 ;
Q/S_length_ratio=1.021"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|X0S8X1|X0S8X1_9ZZZZ ;
ALN/Q_length_ratio=0.834 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S01H1_L07814 OS=marine sediment
metagenome GN=S01H1_18078 PE=4 SV=1 ; EVALUE=1e-33 ;
Q/S_length_ratio=1.021"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|A3ZYY1|A3ZYY1_9PLAN ;
ALN/Q_length_ratio=0.907 ; DESCRIPTION=Uncharacterized
protein OS=Blastopirellula marina DSM 3645
GN=DSM3645_18456 PE=4 SV=1 ; EVALUE=1e-32 ;
Q/S_length_ratio=1.010"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|C1AC15|C1AC15_GEMAT ;
ALN/Q_length_ratio=0.922 ; DESCRIPTION=Sigma factor,
ECF-like family protein OS=Gemmatimonas aurantiaca (strain
T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=GAU_3000
PE=4 SV=1 ; EVALUE=2e-32 ; Q/S_length_ratio=1.016"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|M5TFP7|M5TFP7_9PLAN ;
ALN/Q_length_ratio=0.891 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula sp. SWK7
GN=RRSWK_04777 PE=4 SV=1 ; EVALUE=2e-32 ;
Q/S_length_ratio=1.016"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|Q7NE09|Q7NE09_GLOVI ;
ALN/Q_length_ratio=0.798 ; DESCRIPTION=Gll4071 protein
OS=Gloeobacter violaceus (strain PCC 7421) GN=gll4071 PE=4
SV=1 ; EVALUE=5e-32 ; Q/S_length_ratio=0.980"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|A4A2T9|A4A2T9_9PLAN ;
ALN/Q_length_ratio=0.922 ; DESCRIPTION=Uncharacterized
protein OS=Blastopirellula marina DSM 3645
GN=DSM3645_11631 PE=4 SV=1 ; EVALUE=5e-32 ;
Q/S_length_ratio=0.985"
/note="Pfam_scan:hit_1 (14..192);
Pfam:PF07638.6:Sigma70_ECF;
Pfam_type:Family;HMM_aln_Length:168; HMM_Length:185;
EVALUE:6.7e-42; BITSCORE: 143.2"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MSAWRFLLVG IVPGMILTMS QDSAENPPTD ALFQEVYTHL RAIAGQHLGG AAARGTLTPT
61 GLVHEAYLRL AGRSAAWASR EHFISTAAQA MRQIVLNYAR DKGRLKRGGG RTRVSLDGDG
121 PAVIPLDDGL LDLDDALTRL AAHDPQAARV VLLRYFGGSD WAEIAAALDT SPDEIKHSWE
181 FARAWLHRHL APR
//