LOCUS VTR92226.1 191 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma-e factor : RNA
polymerase sigma-E factor OS=Rhodopirellula maiorica SM1
GN=RMSM_02030 PE=4 SV=1: Sigma70_r2: Sigma70_r4_2 protein.
ACCESSION LR593886-1527
PROTEIN_ID VTR92226.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_54880"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|M5UBX1|M5UBX1_9PLAN ;
ALN/Q_length_ratio=0.874 ; DESCRIPTION=RNA polymerase
sigma-E type, Rhodopirellula baltica OS=Rhodopirellula
sallentina SM41 GN=RSSM_03163 PE=4 SV=1 ; EVALUE=2e-40 ;
Q/S_length_ratio=0.884"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|M5RNZ9|M5RNZ9_9PLAN ;
ALN/Q_length_ratio=0.916 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Rhodopirellula maiorica SM1
GN=RMSM_02030 PE=4 SV=1 ; EVALUE=2e-40 ;
Q/S_length_ratio=0.979"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|M5TIA6|M5TIA6_9PLAN ;
ALN/Q_length_ratio=0.890 ; DESCRIPTION=RNA polymerase
sigma-E type, Rhodopirellula baltica OS=Rhodopirellula sp.
SWK7 GN=RRSWK_02250 PE=4 SV=1 ; EVALUE=6e-38 ;
Q/S_length_ratio=0.995"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|M2ACE2|M2ACE2_9PLAN ;
ALN/Q_length_ratio=0.901 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Rhodopirellula europaea 6C GN=RE6C_04957
PE=4 SV=1 ; EVALUE=5e-37 ; Q/S_length_ratio=0.965"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|F2AKJ6|F2AKJ6_RHOBT ;
ALN/Q_length_ratio=0.901 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Rhodopirellula baltica WH47
GN=RBWH47_00968 PE=4 SV=1 ; EVALUE=5e-37 ;
Q/S_length_ratio=0.965"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|M5S9R0|M5S9R0_9PLAN ;
ALN/Q_length_ratio=0.901 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Rhodopirellula europaea SH398
GN=RESH_01186 PE=4 SV=1 ; EVALUE=8e-37 ;
Q/S_length_ratio=0.965"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|K5CF58|K5CF58_RHOBT ;
ALN/Q_length_ratio=0.901 ; DESCRIPTION=RNA polymerase
sigma-E type, Rhodopirellula baltica OS=Rhodopirellula
baltica SH28 GN=RBSH_02164 PE=4 SV=1 ; EVALUE=9e-37 ;
Q/S_length_ratio=0.827"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L7CN71|L7CN71_RHOBT ;
ALN/Q_length_ratio=0.901 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Rhodopirellula baltica SWK14
GN=RBSWK_01077 PE=4 SV=1 ; EVALUE=1e-36 ;
Q/S_length_ratio=0.827"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|Q7UPG3|Q7UPG3_RHOBA ;
ALN/Q_length_ratio=0.901 ; DESCRIPTION=Probable RNA
polymerase sigma-E factor (ECF subfamily of sigma-70)
OS=Rhodopirellula baltica (strain SH1) GN=RB6961 PE=4 SV=1
; EVALUE=1e-36 ; Q/S_length_ratio=0.827"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|A0A090KMG5|A0A090KMG5_9BACT ;
ALN/Q_length_ratio=0.901 ; DESCRIPTION=Uncultured
bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1 ; EVALUE=5e-34 ;
Q/S_length_ratio=0.936"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L7CBY8|L7CBY8_RHOBT ;
ALN/Q_length_ratio=0.911 ; DESCRIPTION=RNA-polymerase
sigma-E factor OS=Rhodopirellula baltica SWK14
GN=RBSWK_04900 PE=4 SV=1 ; EVALUE=4e-30 ;
Q/S_length_ratio=0.799"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|M5SC14|M5SC14_9PLAN ;
ALN/Q_length_ratio=0.911 ; DESCRIPTION=RNA-polymerase
sigma-E factor OS=Rhodopirellula europaea SH398
GN=RESH_05740 PE=4 SV=1 ; EVALUE=4e-30 ;
Q/S_length_ratio=0.872"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|Q7UJX5|Q7UJX5_RHOBA ;
ALN/Q_length_ratio=0.911 ; DESCRIPTION=Probable
RNA-polymerase sigma-E factor OS=Rhodopirellula baltica
(strain SH1) GN=sigG PE=4 SV=1 ; EVALUE=7e-30 ;
Q/S_length_ratio=0.799"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|F2AV77|F2AV77_RHOBT ;
ALN/Q_length_ratio=0.911 ; DESCRIPTION=RNA-polymerase
sigma-E factor OS=Rhodopirellula baltica WH47
GN=RBWH47_01732 PE=4 SV=1 ; EVALUE=7e-30 ;
Q/S_length_ratio=0.799"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|M2B9D6|M2B9D6_9PLAN ;
ALN/Q_length_ratio=0.911 ; DESCRIPTION=RNA-polymerase
sigma-E factor OS=Rhodopirellula europaea 6C GN=RE6C_00575
PE=4 SV=1 ; EVALUE=8e-30 ; Q/S_length_ratio=0.799"
/note="Pfam_scan:hit_1 (11..83);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:68; HMM_Length:71;
EVALUE:0.00015; BITSCORE: 21.2"
/note="Pfam_scan:hit_2 (125..178);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:51; HMM_Length:54;
EVALUE:1.9e-10; BITSCORE: 40.0"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MEGRTEFRPV EAYTEYLRLL ARLQLAPQLR AKLNPSDVVQ QTVLQAHTHR DQFRGHTEDE
61 WVGWLRAILT NVLTTALRAY GRKARDVGRE WSIDANLEAS ASRIEQWLAA EQSSPSQRAS
121 RHEQLVRLAA ALSQLPTDQR EAVELHHLGG HTVAEVGEFM GRTRAAAMGL IFRGLQHLRE
181 LLGEEEGDGE Q
//