LOCUS VTR92039.1 974 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_7079 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2: Dioxygenase_C protein.
ACCESSION LR593886-1340
PROTEIN_ID VTR92039.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_56750"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DQE6|L0DQE6_SINAD ;
ALN/Q_length_ratio=0.959 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7079 PE=4 SV=1 ; EVALUE=1e-104 ;
Q/S_length_ratio=1.022"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DKL4|L0DKL4_SINAD ;
ALN/Q_length_ratio=0.963 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5058 PE=4 SV=1 ; EVALUE=1e-101 ;
Q/S_length_ratio=1.016"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DI62|L0DI62_SINAD ;
ALN/Q_length_ratio=1.008 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4348 PE=4 SV=1 ; EVALUE=3e-71 ;
Q/S_length_ratio=0.970"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DIK4|L0DIK4_SINAD ;
ALN/Q_length_ratio=0.975 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4459 PE=4 SV=1 ; EVALUE=1e-66 ;
Q/S_length_ratio=0.995"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DHB1|L0DHB1_SINAD ;
ALN/Q_length_ratio=0.974 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4458 PE=4 SV=1 ; EVALUE=4e-66 ;
Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DEJ3|L0DEJ3_SINAD ;
ALN/Q_length_ratio=0.585 ; DESCRIPTION=Uncharacterized
protein OS=Singulisphaera acidiphila (strain ATCC BAA-1392
/ DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_2788 PE=4 SV=1
; EVALUE=5e-60 ; Q/S_length_ratio=1.357"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DQH3|L0DQH3_SINAD ;
ALN/Q_length_ratio=0.651 ; DESCRIPTION=Antirepressor
regulating drug resistance protein OS=Singulisphaera
acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454
/ MOB10) GN=Sinac_7101 PE=4 SV=1 ; EVALUE=1e-55 ;
Q/S_length_ratio=0.940"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|K5DC07|K5DC07_RHOBT ;
ALN/Q_length_ratio=0.593 ; DESCRIPTION=Regulatory protein
blaR1 OS=Rhodopirellula baltica SH28 GN=RBSH_04303 PE=4
SV=1 ; EVALUE=3e-52 ; Q/S_length_ratio=1.584"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M2ALM5|M2ALM5_9PLAN ;
ALN/Q_length_ratio=0.665 ; DESCRIPTION=Regulatory protein
blaR1 OS=Rhodopirellula europaea 6C GN=RE6C_01249 PE=4
SV=1 ; EVALUE=8e-48 ; Q/S_length_ratio=0.541"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|K5DPF0|K5DPF0_RHOBT ;
ALN/Q_length_ratio=0.726 ; DESCRIPTION=Regulatory protein
blaR1 (Fragment) OS=Rhodopirellula baltica SH28
GN=RBSH_00385 PE=4 SV=1 ; EVALUE=2e-41 ;
Q/S_length_ratio=0.960"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DQ81|L0DQ81_SINAD ;
ALN/Q_length_ratio=0.677 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7511 PE=4 SV=1 ; EVALUE=7e-40 ;
Q/S_length_ratio=1.127"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|A6C9E7|A6C9E7_9PLAN ;
ALN/Q_length_ratio=0.631 ; DESCRIPTION=Probable regulatory
protein blaR1 OS=Planctomyces maris DSM 8797
GN=PM8797T_13782 PE=4 SV=1 ; EVALUE=7e-37 ;
Q/S_length_ratio=0.859"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DMT7|L0DMT7_SINAD ;
ALN/Q_length_ratio=0.642 ; DESCRIPTION=Uncharacterized
protein OS=Singulisphaera acidiphila (strain ATCC BAA-1392
/ DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_6491 PE=4 SV=1
; EVALUE=1e-36 ; Q/S_length_ratio=1.445"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.298 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=3e-36 ;
Q/S_length_ratio=0.884"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DPR4|L0DPR4_SINAD ;
ALN/Q_length_ratio=0.315 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6601 PE=4 SV=1 ; EVALUE=1e-35 ;
Q/S_length_ratio=1.607"
/note="Pfam_scan:hit_1 (44..114);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:69; HMM_Length:71;
EVALUE:6.6e-12; BITSCORE: 44.8"
/note="Pfam_scan:hit_2 (142..194);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:51; HMM_Length:54;
EVALUE:2.5e-09; BITSCORE: 36.4"
/note="Pfam_scan:hit_3 (294..407);
Pfam:PF00775.16:Dioxygenase_C;
Pfam_type:Domain;HMM_aln_Length:90; HMM_Length:183;
EVALUE:1.5e-05; BITSCORE: 24.3"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MNRTPLTHLA HRLRPRDPSL TAATDRQLLH RSRSGSDGGA FAELVRRHER AVLAACRQVL
61 SAPADVEDAF QATFLVLVQQ ANRIRCGGSA SLGGWLFAVA HRVAVRAVRS RVRTDRREGA
121 VARADSVAPE PAADLSWREA VGALHEELDA LPDRFRLPLV LCYLEGLSRD EAAAQLGWTA
181 GSVKAGLERG REKLRAALER RGVTLGAGLL TALAGFGSSA TASAELFAAT LRVADGSAPA
241 PVLELARPAV TPFTTSAKFL LGTAAVAALC VGLYAAGKSE PLQQPLPVTK SVDPKADAPA
301 PNSKAVVTAP DAVGTGEPAT VAGRVVGPAG KPVAGATVVW RQKPANAHGL FHADPAELYP
361 APVTGKTDAD GKFKLDVVIR GRTPFRPFNP WGNLTVLANG FGPGASHTGD LISDKWNQNI
421 ELTLAKTDVP IEGRLIDLEG KPVAGVTVRP VMVFFNIAGD LGPWLKSVAG TDYPPDRHQV
481 GISIPATDLE LTQSATTDKD GNFKLTGLGN ERVVGLRVDG PTIETHYVQV MTRPGEKFTI
541 TNRLAWDPSI GPNDVYPAKF THAVAPGGVV RGTVTAADTG KPLAGVRVTS AAWIPGSMPP
601 PLRNITFTDG DGRYTLTGYP RRTPYMLRFD PPNDQPYIAF YGDVPSSEDG KPRTVDMKLP
661 RGVLVSGTVT DKQSRKPLSA VVDYHPSSAN TNLGAKYPIP KQVTCDPKDG SFKLVVLPGD
721 GLLAARISDP CRGAYLPGVG AEEVSWFDKT KNSFASAHLG FPRSFYDSYV GIAPKADSDP
781 LKIDLKLDPG VTAAARFVGP DGKPLTGCSL MTTGHGPDVQ DIRDLPTDRV TLYALDPKRA
841 AIGIVLNTKR KLAGTFTIDG TKPGEVVVKL QPTATVTARL LDSDGALLAR ATVVGHVRTD
901 GKTRPTGFYG TSDKDGNVRI EVIPPGVPVT GEVRQFTGKK NLRFVVPGFD NVVLKPGEVR
961 DLGDVKISTE GKDQ
//