LOCUS VTR92038.1 941 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_5058 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2: CarboxypepD_reg protein.
ACCESSION LR593886-1339
PROTEIN_ID VTR92038.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_56760"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DKL4|L0DKL4_SINAD ;
ALN/Q_length_ratio=0.988 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5058 PE=4 SV=1 ; EVALUE=4e-86 ;
Q/S_length_ratio=0.981"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DQE6|L0DQE6_SINAD ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7079 PE=4 SV=1 ; EVALUE=2e-76 ;
Q/S_length_ratio=0.987"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DI62|L0DI62_SINAD ;
ALN/Q_length_ratio=1.061 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4348 PE=4 SV=1 ; EVALUE=1e-64 ;
Q/S_length_ratio=0.937"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DHB1|L0DHB1_SINAD ;
ALN/Q_length_ratio=1.027 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4458 PE=4 SV=1 ; EVALUE=2e-60 ;
Q/S_length_ratio=0.966"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DIK4|L0DIK4_SINAD ;
ALN/Q_length_ratio=1.007 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4459 PE=4 SV=1 ; EVALUE=6e-57 ;
Q/S_length_ratio=0.961"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.633 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=8e-44 ;
Q/S_length_ratio=0.854"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DMT7|L0DMT7_SINAD ;
ALN/Q_length_ratio=0.662 ; DESCRIPTION=Uncharacterized
protein OS=Singulisphaera acidiphila (strain ATCC BAA-1392
/ DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_6491 PE=4 SV=1
; EVALUE=4e-42 ; Q/S_length_ratio=1.396"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.197 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=9e-42 ;
Q/S_length_ratio=2.950"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.397 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=1e-40 ;
Q/S_length_ratio=2.134"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.318 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=7e-40 ;
Q/S_length_ratio=1.533"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DQH3|L0DQH3_SINAD ;
ALN/Q_length_ratio=0.713 ; DESCRIPTION=Antirepressor
regulating drug resistance protein OS=Singulisphaera
acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454
/ MOB10) GN=Sinac_7101 PE=4 SV=1 ; EVALUE=2e-39 ;
Q/S_length_ratio=0.908"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DQA3|L0DQA3_SINAD ;
ALN/Q_length_ratio=0.274 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6979 PE=4 SV=1 ; EVALUE=3e-39 ;
Q/S_length_ratio=2.115"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DQ81|L0DQ81_SINAD ;
ALN/Q_length_ratio=0.487 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7511 PE=4 SV=1 ; EVALUE=2e-36 ;
Q/S_length_ratio=1.089"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.294 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=2e-36 ;
Q/S_length_ratio=0.767"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DGT0|L0DGT0_SINAD ;
ALN/Q_length_ratio=0.299 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3827 PE=4 SV=1 ; EVALUE=1e-35 ;
Q/S_length_ratio=1.528"
/note="Pfam_scan:hit_1 (45..117);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:62; HMM_Length:71;
EVALUE:2.2e-09; BITSCORE: 36.7"
/note="Pfam_scan:hit_2 (137..190);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:50; HMM_Length:54;
EVALUE:2.2e-11; BITSCORE: 43.0"
/note="Pfam_scan:hit_3 (825..938);
Pfam:PF13620.1:CarboxypepD_reg;
Pfam_type:Domain;HMM_aln_Length:76; HMM_Length:82;
EVALUE:5.1e-07; BITSCORE: 29.6"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MPAHTLTQIA SRLRKEPDST GTDATDRDLL ERFLDAHDEE AFEALVRRHD RLVRSAITKV
61 LPDAHDADDA FQATFLVLVR RAKAIDWRAG LGPWLYGVAH RVAVKARDAG HARTRKEKDA
121 KARTPGAAPD LSWREACVLL HAELDKLPDR YRLPLLLCYL EGKTRDEAAV ALKVTVGTVK
181 GRLERGREML RTRLARRGVA LSVGLLAAAA GAPVGASNSS AVTAVLDAVR GSARPRALGL
241 AREVTASSLL SKLTNTIAGV LGLVAVACVL AASSAKSPEL DEKDKAPQPA PAARPDAKPA
301 AADVKGNEPR PMVVTVTVKK PDGKPAAGAN VSVWAERKQQ VTGTTDANGR AELTVPQSFE
361 KIIAVAFAPG FAPDWAELSS KTSPSGAMRS ELTLQEDSVA LEGRVTDLEG LPVANLPVAI
421 ERIGRPKPGK ALDDFVRVNQ EQRSRGLTSL FDLDSIPAEA VGLPKQVVTD KAGKFKITGI
481 GKDRAARITT RGETTEHLQV RVVTRALEPK LEQHGPFGLH GAKFTLRVGP ARPIVGTIRD
541 AKTGAGVPGM KVAELIANIC ETTTDKDGRF RLVGVRKEIR YMLGTGSLGA SPYFDTNLVI
601 EDPPGLGEIP ANMKVQRGVI ATGRVLDAGG KPVKGSMFYS WARDNPHAKE YLELTDTRIS
661 VNISNWHQLS GDGRYKVLVL PGEGALGVCA SPEDAFQRLN AQVELAKHKV DPFPGDALHA
721 VVAVNIDPKD PKTLTHDFTL TSGKSRPLVV RGVDGKLPDK LLAVGHTEAP EATQVTGGTL
781 KIAGLSSSRT RAVVFLDEAQ TVGAVAAVSG DAKTPVTVTL EKLGSVSGRV FDADGAPGAG
841 ADVRVWLVLA REKYDNLPDE VFADRGVFGI HPGAWQRFTG RETKADKDGR FKLKGLLPGQ
901 QYRLVVGFHP EKKGGELLHQ RADLTVKPGE TTDLGDLKPK K
//