LOCUS VTR91967.1 158 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_3250 PE=4 SV=1: Sigma70_r2:
Sigma70_r4 protein.
ACCESSION LR593886-1268
PROTEIN_ID VTR91967.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_57470"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DFT7|L0DFT7_SINAD ;
ALN/Q_length_ratio=0.956 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3250 PE=4 SV=1 ; EVALUE=1e-36 ;
Q/S_length_ratio=0.913"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0D8Z5|L0D8Z5_SINAD ;
ALN/Q_length_ratio=1.032 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0937 PE=4 SV=1 ; EVALUE=5e-35 ;
Q/S_length_ratio=0.868"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|X0SS88|X0SS88_9ZZZZ ;
ALN/Q_length_ratio=0.962 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S01H1_L00478 OS=marine sediment
metagenome GN=S01H1_04348 PE=4 SV=1 ; EVALUE=2e-29 ;
Q/S_length_ratio=0.929"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|B2UN48|B2UN48_AKKM8 ;
ALN/Q_length_ratio=1.006 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Akkermansia muciniphila
(strain ATCC BAA-835) GN=Amuc_1842 PE=4 SV=1 ;
EVALUE=2e-16 ; Q/S_length_ratio=0.775"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|R6IY53|R6IY53_9BACT ;
ALN/Q_length_ratio=1.006 ; DESCRIPTION=RNA polymerase
sigma-24 subunit ECF subfamily OS=Akkermansia muciniphila
CAG:154 GN=BN502_01598 PE=4 SV=1 ; EVALUE=2e-16 ;
Q/S_length_ratio=0.775"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|B1ZUQ2|B1ZUQ2_OPITP ;
ALN/Q_length_ratio=0.975 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Opitutus terrae (strain
DSM 11246 / PB90-1) GN=Oter_1652 PE=4 SV=1 ; EVALUE=9e-16
; Q/S_length_ratio=0.924"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|R7E2S3|R7E2S3_9BACT ;
ALN/Q_length_ratio=1.025 ; DESCRIPTION=RNA polymerase
sigma-24 subunit ECF subfamily OS=Akkermansia sp. CAG:344
GN=BN616_02512 PE=4 SV=1 ; EVALUE=5e-15 ;
Q/S_length_ratio=0.782"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0D6L3|L0D6L3_SINAD ;
ALN/Q_length_ratio=0.918 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0043 PE=4 SV=1 ; EVALUE=2e-14 ;
Q/S_length_ratio=0.958"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|W2DPK7|W2DPK7_9PSED ;
ALN/Q_length_ratio=0.987 ; DESCRIPTION=Sigma factor
OS=Pseudomonas sp. FH1 GN=H096_20670 PE=4 SV=1 ;
EVALUE=9e-11 ; Q/S_length_ratio=0.903"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|B4CU29|B4CU29_9BACT ;
ALN/Q_length_ratio=0.937 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Chthoniobacter flavus
Ellin428 GN=CfE428DRAFT_0192 PE=4 SV=1 ; EVALUE=5e-10 ;
Q/S_length_ratio=0.786"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|A0A021WYW6|A0A021WYW6_9RHIZ ;
ALN/Q_length_ratio=0.873 ; DESCRIPTION=RNA polymerase
sigma factor OS=Shinella sp. DD12 GN=SHLA_19c000840 PE=4
SV=1 ; EVALUE=2e-09 ; Q/S_length_ratio=0.929"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|B5JHT1|B5JHT1_9BACT ;
ALN/Q_length_ratio=0.943 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Verrucomicrobiae
bacterium DG1235 GN=VDG1235_1406 PE=4 SV=1 ; EVALUE=4e-09
; Q/S_length_ratio=1.013"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|B4D3T3|B4D3T3_9BACT ;
ALN/Q_length_ratio=0.880 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Chthoniobacter flavus
Ellin428 GN=CfE428DRAFT_3571 PE=4 SV=1 ; EVALUE=6e-09 ;
Q/S_length_ratio=0.981"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|A0A098SWN4|A0A098SWN4_9PSED ;
ALN/Q_length_ratio=0.842 ; DESCRIPTION=Uncharacterized
protein OS=Pseudomonas lutea GN=LT42_01460 PE=4 SV=1 ;
EVALUE=2e-08 ; Q/S_length_ratio=0.935"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|A3Q3Q6|A3Q3Q6_MYCSJ ;
ALN/Q_length_ratio=1.019 ; DESCRIPTION=RNA polymerase,
sigma 29 subunit, SigE OS=Mycobacterium sp. (strain JLS)
GN=Mjls_4008 PE=4 SV=1 ; EVALUE=2e-08 ;
Q/S_length_ratio=0.625"
/note="Pfam_scan:hit_1 (9..74); Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:69; HMM_Length:71;
EVALUE:1.6e-06; BITSCORE: 27.6"
/note="Pfam_scan:hit_2 (101..150);
Pfam:PF04545.11:Sigma70_r4;
Pfam_type:Domain;HMM_aln_Length:49; HMM_Length:50;
EVALUE:7.5e-09; BITSCORE: 34.7"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MTARQIAELI TSHAAVLALF ARQWCADPED AVQDAFCKLV RQSVPPGDPV AWLFRVVRTT
61 AIDRGRVDRR RVKRETVTAR PERWFAEREI DGMDAPTAVA ALDALPAELR EVIVARLWGG
121 MTLEQVAAVA GCSLTTAHRR YEAGIMALRE RLGVTCPK
//