LOCUS VTR91904.1 211 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna sigma-24 ecf subfamily : RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Rhodopirellula sallentina
SM41 GN=RSSM_00315 PE=4 SV=1: Sigma70_r2: Sigma70_r4_2
protein.
ACCESSION LR593886-1205
PROTEIN_ID VTR91904.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_58100"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|M5UA15|M5UA15_9PLAN ;
ALN/Q_length_ratio=0.820 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Rhodopirellula
sallentina SM41 GN=RSSM_00315 PE=4 SV=1 ; EVALUE=2e-55 ;
Q/S_length_ratio=1.039"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|D5SVN0|D5SVN0_PLAL2 ;
ALN/Q_length_ratio=0.791 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Planctomyces limnophilus
(strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290)
GN=Plim_3577 PE=4 SV=1 ; EVALUE=3e-51 ;
Q/S_length_ratio=1.122"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|D2R932|D2R932_PIRSD ;
ALN/Q_length_ratio=0.791 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_1180
PE=4 SV=1 ; EVALUE=3e-51 ; Q/S_length_ratio=1.122"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|M5TBI3|M5TBI3_9PLAN ;
ALN/Q_length_ratio=0.848 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Rhodopirellula sp. SWK7
GN=RRSWK_06362 PE=4 SV=1 ; EVALUE=2e-46 ;
Q/S_length_ratio=1.039"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|I7ZAM0|I7ZAM0_9GAMM ;
ALN/Q_length_ratio=0.834 ; DESCRIPTION=Uncharacterized
protein OS=Hydrocarboniphaga effusa AP103 GN=WQQ_39120
PE=4 SV=1 ; EVALUE=4e-46 ; Q/S_length_ratio=1.116"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|D2R2Z2|D2R2Z2_PIRSD ;
ALN/Q_length_ratio=0.758 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_4073
PE=4 SV=1 ; EVALUE=4e-41 ; Q/S_length_ratio=1.134"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|A6GEA4|A6GEA4_9DELT ;
ALN/Q_length_ratio=0.725 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily protein OS=Plesiocystis
pacifica SIR-1 GN=PPSIR1_34817 PE=4 SV=1 ; EVALUE=5e-38 ;
Q/S_length_ratio=1.213"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|K9F707|K9F707_9CYAN ;
ALN/Q_length_ratio=0.815 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Leptolyngbya sp. PCC 7375
GN=Lepto7375DRAFT_6427 PE=4 SV=1 ; EVALUE=3e-34 ;
Q/S_length_ratio=1.141"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|U5VZY6|U5VZY6_9ACTO ;
ALN/Q_length_ratio=0.829 ; DESCRIPTION=Putative RNA
polymerase ECF-subfamily sigma factor OS=Actinoplanes
friuliensis DSM 7358 GN=AFR_20885 PE=4 SV=1 ; EVALUE=8e-32
; Q/S_length_ratio=1.111"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|K9UGG3|K9UGG3_9CHRO ;
ALN/Q_length_ratio=0.815 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Chamaesiphon minutus PCC
6605 GN=Cha6605_2191 PE=4 SV=1 ; EVALUE=5e-31 ;
Q/S_length_ratio=1.122"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|A0A098TQM8|A0A098TQM8_9CHRO ;
ALN/Q_length_ratio=0.806 ; DESCRIPTION=RNA polymerase
OS=Neosynechococcus sphagnicola sy1 GN=DO97_02035 PE=4
SV=1 ; EVALUE=9e-31 ; Q/S_length_ratio=1.111"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|A0A085XTU4|A0A085XTU4_9DELT ;
ALN/Q_length_ratio=0.673 ; DESCRIPTION=RNA polymerase
sigma-70 factor OS=Sandaracinus amylolyticus GN=DB32_4605
PE=4 SV=1 ; EVALUE=1e-29 ; Q/S_length_ratio=1.407"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|Q7NH29|Q7NH29_GLOVI ;
ALN/Q_length_ratio=0.848 ; DESCRIPTION=Gll2708 protein
OS=Gloeobacter violaceus (strain PCC 7421) GN=gll2708 PE=4
SV=1 ; EVALUE=1e-29 ; Q/S_length_ratio=1.116"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|B8HNZ8|B8HNZ8_CYAP4 ;
ALN/Q_length_ratio=0.834 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Cyanothece sp. (strain
PCC 7425 / ATCC 29141) GN=Cyan7425_3258 PE=4 SV=1 ;
EVALUE=5e-29 ; Q/S_length_ratio=1.105"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|K9WCZ8|K9WCZ8_9CYAN ;
ALN/Q_length_ratio=0.844 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Microcoleus sp. PCC 7113
GN=Mic7113_1824 PE=4 SV=1 ; EVALUE=5e-29 ;
Q/S_length_ratio=0.986"
/note="Pfam_scan:hit_1 (53..122);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:68; HMM_Length:71;
EVALUE:4.1e-21; BITSCORE: 74.3"
/note="Pfam_scan:hit_2 (148..200);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:45; HMM_Length:54;
EVALUE:4.4e-13; BITSCORE: 48.4"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MAPVTGRVVS CIRWRARDEW CRDWRAASQG ADLVTDSVLP RIAAGDPAAV PDCIARYGGL
61 VWSLARRFLG NPSDAEDAVQ DVFIELWKNA GRYDPSRSSE PTYVTMIARR RLIDRKRRTG
121 RAPTAQTLAD EPVEPVTVAR IDIEDEAAKA AAVLAELRED ERRVIQLAVY QGLTHEAIAA
181 QTGLPVGTVK THIRRGLIRV RERLTAGGGA S
//