LOCUS VTR91895.1 207 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma factor : RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Rhodopirellula maiorica
SM1 GN=RMSM_06145 PE=4 SV=1: Sigma70_r2: Sigma70_r4_2
protein.
ACCESSION LR593886-1196
PROTEIN_ID VTR91895.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_58190"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|M5RC25|M5RC25_9PLAN ;
ALN/Q_length_ratio=0.812 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Rhodopirellula maiorica
SM1 GN=RMSM_06145 PE=4 SV=1 ; EVALUE=4e-49 ;
Q/S_length_ratio=1.150"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|D2R2W6|D2R2W6_PIRSD ;
ALN/Q_length_ratio=0.860 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_4046
PE=4 SV=1 ; EVALUE=5e-49 ; Q/S_length_ratio=1.119"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A3ZS05|A3ZS05_9PLAN ;
ALN/Q_length_ratio=0.816 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Blastopirellula marina DSM 3645
GN=DSM3645_12941 PE=4 SV=1 ; EVALUE=2e-48 ;
Q/S_length_ratio=1.113"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|B8E041|B8E041_DICTD ;
ALN/Q_length_ratio=1.014 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Dictyoglomus turgidum
(strain Z-1310 / DSM 6724) GN=Dtur_0843 PE=4 SV=1 ;
EVALUE=6e-17 ; Q/S_length_ratio=0.928"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|C0GD82|C0GD82_9FIRM ;
ALN/Q_length_ratio=0.734 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Dethiobacter
alkaliphilus AHT 1 GN=DealDRAFT_0533 PE=4 SV=1 ;
EVALUE=1e-16 ; Q/S_length_ratio=1.240"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|W0RR67|W0RR67_9BACT ;
ALN/Q_length_ratio=0.773 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Gemmatimonadetes
bacterium KBS708 GN=J421_4541 PE=4 SV=1 ; EVALUE=2e-16 ;
Q/S_length_ratio=1.163"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|F9DSD7|F9DSD7_9BACL ;
ALN/Q_length_ratio=0.773 ; DESCRIPTION=ECF family
DNA-directed RNA polymerase sigma subunit SigW
OS=Sporosarcina newyorkensis 2681 GN=HMPREF9372_1717 PE=4
SV=1 ; EVALUE=3e-16 ; Q/S_length_ratio=1.067"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|S0EVJ3|S0EVJ3_CHTCT ;
ALN/Q_length_ratio=0.836 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, RpoE OS=Chthonomonas calidirosea (strain
DSM 23976 / ICMP 18418 / T49) GN=CCALI_02009 PE=4 SV=1 ;
EVALUE=4e-16 ; Q/S_length_ratio=1.073"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M4X0J2|M4X0J2_PSEDE ;
ALN/Q_length_ratio=0.826 ; DESCRIPTION=RNA polymerase
sigma factor OS=Pseudomonas denitrificans ATCC 13867
GN=H681_15915 PE=4 SV=1 ; EVALUE=6e-16 ;
Q/S_length_ratio=1.056"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0D7Z3|L0D7Z3_SINAD ;
ALN/Q_length_ratio=0.758 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0328 PE=4 SV=1 ; EVALUE=7e-16 ;
Q/S_length_ratio=1.056"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|W4V8L2|W4V8L2_9FIRM ;
ALN/Q_length_ratio=0.715 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=[Clostridium] straminisolvens JCM 21531
GN=JCM21531_2583 PE=4 SV=1 ; EVALUE=1e-15 ;
Q/S_length_ratio=1.045"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|R6MNA0|R6MNA0_9FIRM ;
ALN/Q_length_ratio=0.744 ; DESCRIPTION=Putative RNA
polymerase sigma factor RpoE OS=Firmicutes bacterium
CAG:170 GN=BN515_01446 PE=4 SV=1 ; EVALUE=1e-15 ;
Q/S_length_ratio=1.062"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|U6ZUH8|U6ZUH8_9PSED ;
ALN/Q_length_ratio=0.889 ; DESCRIPTION=RNA polymerase
sigma factor OS=Pseudomonas sp. CMAA1215 GN=P308_00885
PE=4 SV=1 ; EVALUE=1e-15 ; Q/S_length_ratio=1.073"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|R5RWN8|R5RWN8_9FIRM ;
ALN/Q_length_ratio=0.879 ; DESCRIPTION=RNA polymerase ECF
subfamily sigma factor OS=Firmicutes bacterium CAG:129
GN=BN483_00134 PE=4 SV=1 ; EVALUE=1e-15 ;
Q/S_length_ratio=1.005"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|W5IMQ5|W5IMQ5_PSEUO ;
ALN/Q_length_ratio=0.855 ; DESCRIPTION=RNA polymerase
sigma factor OS=Pseudomonas sp. (strain M1) GN=PM1_0225850
PE=4 SV=1 ; EVALUE=2e-15 ; Q/S_length_ratio=1.119"
/note="Pfam_scan:hit_1 (41..109);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:67; HMM_Length:71;
EVALUE:2.8e-12; BITSCORE: 46.0"
/note="Pfam_scan:hit_2 (138..191);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:52; HMM_Length:54;
EVALUE:5.6e-12; BITSCORE: 44.9"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MAKPGAPPIS RPIAGSDPAP DAPVVPPEPA DRPSDDTLVA TFNQVRDELV STLLYLLGNA
61 DDAQDAAQEA FLKCWRARSS VPDVQNLRAW IFRVGLNAAK DFQRSAWNRK SRPLPEDDVM
121 LPTRDEAPGR GAEDQEALDR LRQAIAQLRQ DEKEVFLLRQ NGDLTYEQIA EIRSAPVGTV
181 KTQMRTALIK LRKVLNPAGA TEEEPCS
//