LOCUS VTR91880.1 194 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana extracytoplasmic function alternative
sigma factor : RNA polymerase, sigma-24 subunit, ECF subfamily
OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB
4128) GN=Psta_4560 PE=4 SV=1: Sigma70_r2 protein.
ACCESSION LR593886-1181
PROTEIN_ID VTR91880.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_58340"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|D2R6Z9|D2R6Z9_PIRSD ;
ALN/Q_length_ratio=0.995 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_4560
PE=4 SV=1 ; EVALUE=4e-64 ; Q/S_length_ratio=0.970"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|M2AYP9|M2AYP9_9PLAN ;
ALN/Q_length_ratio=0.995 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
europaea 6C GN=RE6C_01458 PE=4 SV=1 ; EVALUE=8e-53 ;
Q/S_length_ratio=0.956"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|M5RQI2|M5RQI2_9PLAN ;
ALN/Q_length_ratio=0.995 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
maiorica SM1 GN=RMSM_01476 PE=4 SV=1 ; EVALUE=4e-45 ;
Q/S_length_ratio=0.985"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|A0A090KPT7|A0A090KPT7_9BACT ;
ALN/Q_length_ratio=0.959 ; DESCRIPTION=Uncultured
bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1 ; EVALUE=2e-40 ;
Q/S_length_ratio=0.764"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|M5T0G9|M5T0G9_9PLAN ;
ALN/Q_length_ratio=0.995 ; DESCRIPTION=RNA polymerase
sigma factor Y OS=Rhodopirellula sp. SWK7 GN=RRSWK_04916
PE=4 SV=1 ; EVALUE=4e-35 ; Q/S_length_ratio=0.995"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|A6C643|A6C643_9PLAN ;
ALN/Q_length_ratio=0.964 ; DESCRIPTION=Probable RNA
polymerase sigma factor nccH OS=Planctomyces maris DSM
8797 GN=PM8797T_31093 PE=4 SV=1 ; EVALUE=4e-31 ;
Q/S_length_ratio=0.990"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|D5ST62|D5ST62_PLAL2 ;
ALN/Q_length_ratio=0.985 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Planctomyces limnophilus
(strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290)
GN=Plim_0986 PE=4 SV=1 ; EVALUE=4e-30 ;
Q/S_length_ratio=0.960"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M5U909|M5U909_9PLAN ;
ALN/Q_length_ratio=0.954 ; DESCRIPTION=RNA polymerase
sigma-70 domain protein OS=Rhodopirellula sallentina SM41
GN=RSSM_00635 PE=4 SV=1 ; EVALUE=6e-30 ;
Q/S_length_ratio=1.021"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M5RQ59|M5RQ59_9PLAN ;
ALN/Q_length_ratio=0.948 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
maiorica SM1 GN=RMSM_06978 PE=4 SV=1 ; EVALUE=1e-29 ;
Q/S_length_ratio=0.915"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DKJ5|L0DKJ5_SINAD ;
ALN/Q_length_ratio=0.985 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5656 PE=4 SV=1 ; EVALUE=1e-26 ;
Q/S_length_ratio=0.898"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|M5UII0|M5UII0_9PLAN ;
ALN/Q_length_ratio=0.928 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
sallentina SM41 GN=RSSM_00910 PE=4 SV=1 ; EVALUE=8e-25 ;
Q/S_length_ratio=0.946"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M5SZY3|M5SZY3_9PLAN ;
ALN/Q_length_ratio=0.933 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula sp.
SWK7 GN=RRSWK_04987 PE=4 SV=1 ; EVALUE=9e-24 ;
Q/S_length_ratio=0.946"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DAW4|L0DAW4_SINAD ;
ALN/Q_length_ratio=0.985 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_1616 PE=4 SV=1 ; EVALUE=3e-23 ;
Q/S_length_ratio=0.970"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DJB5|L0DJB5_SINAD ;
ALN/Q_length_ratio=0.954 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4755 PE=4 SV=1 ; EVALUE=3e-23 ;
Q/S_length_ratio=0.933"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|A3ZMN1|A3ZMN1_9PLAN ;
ALN/Q_length_ratio=0.974 ; DESCRIPTION=Probable
extracytoplasmic function alternative sigma factor
OS=Blastopirellula marina DSM 3645 GN=DSM3645_00780 PE=4
SV=1 ; EVALUE=2e-22 ; Q/S_length_ratio=0.970"
/note="Pfam_scan:hit_1 (24..94);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:63; HMM_Length:71;
EVALUE:2.6e-09; BITSCORE: 36.5"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MQVTSATLLE RLRDPRDSGA WERLVELYAP LIRVWAERLN VRGADADDLV QEVMAVVVRR
61 FPEFVHPEKP GAFRGWLRAI AANCARTVWK GRKVHPTAPG GSDFGTYIAR LEDPTDDFAR
121 AWEREHDLHV TRKLLERIKP DFEARTWELF GRFVLDGLSA EEVAAEAGVT ANAVYIAKSR
181 VLARLREEAG GLLG
//