LOCUS VTR91773.1 207 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna sigma-24 ecf subfamily : Marine
sediment metagenome DNA, contig: S01H1_L06536 OS=marine
sediment metagenome GN=S01H1_15949 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2 protein.
ACCESSION LR593886-1074
PROTEIN_ID VTR91773.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_59410"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|X0S9D5|X0S9D5_9ZZZZ ;
ALN/Q_length_ratio=0.821 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S01H1_L06536 OS=marine sediment
metagenome GN=S01H1_15949 PE=4 SV=1 ; EVALUE=4e-50 ;
Q/S_length_ratio=1.067"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|X1TW00|X1TW00_9ZZZZ ;
ALN/Q_length_ratio=0.763 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S12H4_S04741 OS=marine sediment
metagenome GN=S12H4_32609 PE=4 SV=1 ; EVALUE=4e-22 ;
Q/S_length_ratio=1.169"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|D2QZT7|D2QZT7_PIRSD ;
ALN/Q_length_ratio=0.802 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_1896
PE=4 SV=1 ; EVALUE=7e-17 ; Q/S_length_ratio=1.067"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|A0A085XXK9|A0A085XXK9_9DELT ;
ALN/Q_length_ratio=0.787 ; DESCRIPTION=RNA polymerase
sigma-70 factor, ECF subfamily protein OS=Sandaracinus
amylolyticus GN=DB32_3001 PE=4 SV=1 ; EVALUE=5e-15 ;
Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|C1AEN0|C1AEN0_GEMAT ;
ALN/Q_length_ratio=0.908 ; DESCRIPTION=RNA polymerase
sigma factor OS=Gemmatimonas aurantiaca (strain T-27 / DSM
14586 / JCM 11422 / NBRC 100505) GN=GAU_3915 PE=3 SV=1 ;
EVALUE=1e-14 ; Q/S_length_ratio=1.056"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|M5SFW4|M5SFW4_9PLAN ;
ALN/Q_length_ratio=0.792 ; DESCRIPTION=RNA polymerase
sigma-70 domain protein OS=Rhodopirellula europaea SH398
GN=RESH_02852 PE=4 SV=1 ; EVALUE=2e-14 ;
Q/S_length_ratio=1.030"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|X1MML0|X1MML0_9ZZZZ ;
ALN/Q_length_ratio=0.783 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S06H3_C04153 OS=marine sediment
metagenome GN=S06H3_09424 PE=4 SV=1 ; EVALUE=9e-14 ;
Q/S_length_ratio=1.073"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|H6LIF4|H6LIF4_ACEWD ;
ALN/Q_length_ratio=0.821 ; DESCRIPTION=RNA polymerase
ECF-like sigma factor OS=Acetobacterium woodii (strain
ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655)
GN=Awo_c05290 PE=4 SV=1 ; EVALUE=3e-12 ;
Q/S_length_ratio=1.150"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|B8I8R0|B8I8R0_CLOCE ;
ALN/Q_length_ratio=0.763 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Clostridium
cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 /
H10) GN=Ccel_0927 PE=4 SV=1 ; EVALUE=6e-12 ;
Q/S_length_ratio=1.125"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|K2F1V2|K2F1V2_9BACT ;
ALN/Q_length_ratio=0.816 ; DESCRIPTION=Uncharacterized
protein OS=uncultured bacterium GN=ACD_14C00045G0001 PE=4
SV=1 ; EVALUE=7e-12 ; Q/S_length_ratio=0.812"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|X1R1V5|X1R1V5_9ZZZZ ;
ALN/Q_length_ratio=0.744 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S12H4_L01665 OS=marine sediment
metagenome GN=S12H4_15858 PE=4 SV=1 ; EVALUE=3e-11 ;
Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|R9IGC7|R9IGC7_9FIRM ;
ALN/Q_length_ratio=0.821 ; DESCRIPTION=Sigma-70 family RNA
polymerase sigma factor OS=Lachnospiraceae bacterium A4
GN=C804_06199 PE=4 SV=1 ; EVALUE=4e-11 ;
Q/S_length_ratio=1.183"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|W0RBG7|W0RBG7_9BACT ;
ALN/Q_length_ratio=0.918 ; DESCRIPTION=RNA polymerase
sigma factor OS=Gemmatimonadetes bacterium KBS708
GN=J421_0907 PE=3 SV=1 ; EVALUE=4e-11 ;
Q/S_length_ratio=0.976"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|A7NMJ7|A7NMJ7_ROSCS ;
ALN/Q_length_ratio=0.758 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Roseiflexus
castenholzii (strain DSM 13941 / HLO8) GN=Rcas_2697 PE=4
SV=1 ; EVALUE=5e-11 ; Q/S_length_ratio=0.981"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|D2BCX2|D2BCX2_STRRD ;
ALN/Q_length_ratio=0.797 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Streptosporangium
roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI
9100) GN=Sros_1215 PE=4 SV=1 ; EVALUE=1e-10 ;
Q/S_length_ratio=1.156"
/note="Pfam_scan:hit_1 (50..120);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:69; HMM_Length:71;
EVALUE:3.6e-11; BITSCORE: 42.5"
/note="Pfam_scan:hit_2 (145..198);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:51; HMM_Length:54;
EVALUE:4.3e-07; BITSCORE: 29.2"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MIPIVLAKKF REGFRPHADN IRTMSDGDPW HERAIRDAVL AGDATAWRQW FDAHYERLAD
61 YVRWRCGGLR DLTDDVLQET WLTAVRRVRA FDPARGAFFQ WLCGIASNAA RNAIRSRYRR
121 NARFRPLAPG DDRPCPDARA EIEKAERVAA ALAALPDHYE AVLRAKYLDR QTADEIAAAR
181 NDSPKAVESL LARARQAFRA IYENGHE
//