LOCUS VTR91659.1 3704 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rhs repeat-associated core domain protein
: YD repeat protein OS=Planctomyces limnophilus (strain
ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_1050
PE=4 SV=1: SBBP: SBBP: RHS_repeat: RHS_repeat: RHS_repeat:
RHS_repeat: RHS_repeat: RHS_repeat: RHS_repeat: RHS_repeat:
RHS_repeat: RHS_repeat: RHS_repeat: RHS_repeat: RHS_repeat:
RHS_repeat: RHS_repeat: RHS_repeat: RHS_repeat: RHS_repeat:
RHS_repeat protein.
ACCESSION LR593886-960
PROTEIN_ID VTR91659.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_60550"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|U5DP73|U5DP73_9CHRO ;
ALN/Q_length_ratio=0.377 ; DESCRIPTION=RHS
repeat-associated core domain protein OS=Rubidibacter
lacunae KORDI 51-2 GN=KR51_00020840 PE=4 SV=1 ; EVALUE=0.0
; Q/S_length_ratio=0.277"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|D5STC2|D5STC2_PLAL2 ;
ALN/Q_length_ratio=0.584 ; DESCRIPTION=YD repeat protein
OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776
/ IFAM 1008 / 290) GN=Plim_1050 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.356"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|H1CM10|H1CM10_9FIRM ;
ALN/Q_length_ratio=0.423 ; DESCRIPTION=YD repeat (Two
copies) (Fragment) OS=Lachnospiraceae bacterium 7_1_58FAA
GN=HMPREF0995_05488 PE=4 SV=1 ; EVALUE=1e-171 ;
Q/S_length_ratio=1.935"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|D9SWJ8|D9SWJ8_CLOC7 ;
ALN/Q_length_ratio=0.401 ; DESCRIPTION=Uncharacterized
protein OS=Clostridium cellulovorans (strain ATCC 35296 /
DSM 3052 / OCM 3 / 743B) GN=Clocel_3608 PE=4 SV=1 ;
EVALUE=1e-167 ; Q/S_length_ratio=1.048"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|H1CCX0|H1CCX0_9FIRM ;
ALN/Q_length_ratio=0.408 ; DESCRIPTION=YD repeat (Two
copies) OS=Lachnospiraceae bacterium 7_1_58FAA
GN=HMPREF0995_02298 PE=4 SV=1 ; EVALUE=1e-165 ;
Q/S_length_ratio=1.342"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|K9RWK0|K9RWK0_SYNP3 ;
ALN/Q_length_ratio=0.291 ; DESCRIPTION=RHS
repeat-associated core domain protein OS=Synechococcus sp.
(strain ATCC 27167 / PCC 6312) GN=Syn6312_2848 PE=4 SV=1 ;
EVALUE=1e-164 ; Q/S_length_ratio=0.711"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|V8BKT9|V8BKT9_9FIRM ;
ALN/Q_length_ratio=0.482 ; DESCRIPTION=Uncharacterized
protein OS=Ruminococcus lactaris CC59_002D
GN=HMPREF1202_02812 PE=4 SV=1 ; EVALUE=1e-162 ;
Q/S_length_ratio=1.235"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|D4J5Z0|D4J5Z0_9FIRM ;
ALN/Q_length_ratio=0.482 ; DESCRIPTION=Rhs family protein
OS=Coprococcus catus GD/7 GN=CC1_09070 PE=4 SV=1 ;
EVALUE=1e-162 ; Q/S_length_ratio=1.166"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|A6BGA0|A6BGA0_9FIRM ;
ALN/Q_length_ratio=0.482 ; DESCRIPTION=RHS
repeat-associated core domain protein OS=Dorea longicatena
DSM 13814 GN=DORLON_01322 PE=4 SV=1 ; EVALUE=1e-161 ;
Q/S_length_ratio=1.171"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|U2AWV3|U2AWV3_9CLOT ;
ALN/Q_length_ratio=0.425 ; DESCRIPTION=RHS
repeat-associated core domain protein OS=Clostridium sp.
ATCC BAA-442 GN=HMPREF0239_04348 PE=4 SV=1 ; EVALUE=1e-160
; Q/S_length_ratio=1.353"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|R6WRS1|R6WRS1_9FIRM ;
ALN/Q_length_ratio=0.482 ; DESCRIPTION=Rhs family protein
OS=Dorea sp. CAG:317 GN=BN605_02188 PE=4 SV=1 ;
EVALUE=1e-159 ; Q/S_length_ratio=1.235"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|A0A096B3Q6|A0A096B3Q6_9FIRM ;
ALN/Q_length_ratio=0.424 ; DESCRIPTION=Uncharacterized
protein OS=Clostridium orbiscindens 1_3_50AFAA
GN=HMPREF9460_03582 PE=4 SV=1 ; EVALUE=1e-158 ;
Q/S_length_ratio=1.734"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|G9RR45|G9RR45_9FIRM ;
ALN/Q_length_ratio=0.407 ; DESCRIPTION=YD repeat protein
OS=Subdoligranulum sp. 4_3_54A2FAA GN=HMPREF1032_03447
PE=4 SV=1 ; EVALUE=1e-158 ; Q/S_length_ratio=1.160"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|B5CRR6|B5CRR6_9FIRM ;
ALN/Q_length_ratio=0.482 ; DESCRIPTION=RHS
repeat-associated core domain protein OS=Ruminococcus
lactaris ATCC 29176 GN=RUMLAC_02167 PE=4 SV=1 ;
EVALUE=1e-158 ; Q/S_length_ratio=1.687"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|A0A0A0CAQ6|A0A0A0CAQ6_9CELL ;
ALN/Q_length_ratio=0.418 ; DESCRIPTION=Uncharacterized
protein OS=Actinotalea fermentans ATCC 43279 = JCM 9966 =
DSM 3133 GN=N867_11480 PE=4 SV=1 ; EVALUE=1e-154 ;
Q/S_length_ratio=1.338"
/note="Pfam_scan:hit_1 (571..611); Pfam:PF06739.6:SBBP;
Pfam_type:Repeat;HMM_aln_Length:37; HMM_Length:38;
EVALUE:0.00014; BITSCORE: 21.5"
/note="Pfam_scan:hit_2 (780..814); Pfam:PF06739.6:SBBP;
Pfam_type:Repeat;HMM_aln_Length:34; HMM_Length:38;
EVALUE:0.00016; BITSCORE: 21.3"
/note="Pfam_scan:hit_3 (1373..1421);
Pfam:PF05593.9:RHS_repeat;
Pfam_type:Repeat;HMM_aln_Length:26; HMM_Length:38;
EVALUE:0.0001; BITSCORE: 22.3"
/note="Pfam_scan:hit_4 (1680..1717);
Pfam:PF05593.9:RHS_repeat;
Pfam_type:Repeat;HMM_aln_Length:37; HMM_Length:38;
EVALUE:9.2e-08; BITSCORE: 32.0"
/note="Pfam_scan:hit_5 (1724..1759);
Pfam:PF05593.9:RHS_repeat;
Pfam_type:Repeat;HMM_aln_Length:31; HMM_Length:38;
EVALUE:3.8e-05; BITSCORE: 23.7"
/note="Pfam_scan:hit_6 (1800..1847);
Pfam:PF05593.9:RHS_repeat;
Pfam_type:Repeat;HMM_aln_Length:36; HMM_Length:38;
EVALUE:7.8e-05; BITSCORE: 22.7"
/note="Pfam_scan:hit_7 (1894..1931);
Pfam:PF05593.9:RHS_repeat;
Pfam_type:Repeat;HMM_aln_Length:36; HMM_Length:38;
EVALUE:1.6e-06; BITSCORE: 28.1"
/note="Pfam_scan:hit_8 (1936..1973);
Pfam:PF05593.9:RHS_repeat;
Pfam_type:Repeat;HMM_aln_Length:36; HMM_Length:38;
EVALUE:1.8e-06; BITSCORE: 27.9"
/note="Pfam_scan:hit_9 (2104..2141);
Pfam:PF05593.9:RHS_repeat;
Pfam_type:Repeat;HMM_aln_Length:36; HMM_Length:38;
EVALUE:1e-07; BITSCORE: 31.8"
/note="Pfam_scan:hit_10 (2188..2224);
Pfam:PF05593.9:RHS_repeat;
Pfam_type:Repeat;HMM_aln_Length:34; HMM_Length:38;
EVALUE:5.1e-07; BITSCORE: 29.7"
/note="Pfam_scan:hit_11 (2230..2266);
Pfam:PF05593.9:RHS_repeat;
Pfam_type:Repeat;HMM_aln_Length:34; HMM_Length:38;
EVALUE:1.1e-05; BITSCORE: 25.4"
/note="Pfam_scan:hit_12 (2272..2309);
Pfam:PF05593.9:RHS_repeat;
Pfam_type:Repeat;HMM_aln_Length:36; HMM_Length:38;
EVALUE:8.9e-10; BITSCORE: 38.4"
/note="Pfam_scan:hit_13 (2398..2436);
Pfam:PF05593.9:RHS_repeat;
Pfam_type:Repeat;HMM_aln_Length:33; HMM_Length:38;
EVALUE:0.00035; BITSCORE: 20.6"
/note="Pfam_scan:hit_14 (2440..2477);
Pfam:PF05593.9:RHS_repeat;
Pfam_type:Repeat;HMM_aln_Length:36; HMM_Length:38;
EVALUE:6.8e-07; BITSCORE: 29.3"
/note="Pfam_scan:hit_15 (2482..2518);
Pfam:PF05593.9:RHS_repeat;
Pfam_type:Repeat;HMM_aln_Length:33; HMM_Length:38;
EVALUE:2.9e-05; BITSCORE: 24.0"
/note="Pfam_scan:hit_16 (2524..2562);
Pfam:PF05593.9:RHS_repeat;
Pfam_type:Repeat;HMM_aln_Length:36; HMM_Length:38;
EVALUE:1.7e-08; BITSCORE: 34.4"
/note="Pfam_scan:hit_17 (2566..2603);
Pfam:PF05593.9:RHS_repeat;
Pfam_type:Repeat;HMM_aln_Length:37; HMM_Length:38;
EVALUE:0.00042; BITSCORE: 20.4"
/note="Pfam_scan:hit_18 (2650..2687);
Pfam:PF05593.9:RHS_repeat;
Pfam_type:Repeat;HMM_aln_Length:36; HMM_Length:38;
EVALUE:1.6e-06; BITSCORE: 28.1"
/note="Pfam_scan:hit_19 (2692..2729);
Pfam:PF05593.9:RHS_repeat;
Pfam_type:Repeat;HMM_aln_Length:36; HMM_Length:38;
EVALUE:4.8e-08; BITSCORE: 32.9"
/note="Pfam_scan:hit_20 (2734..2777);
Pfam:PF05593.9:RHS_repeat;
Pfam_type:Repeat;HMM_aln_Length:30; HMM_Length:38;
EVALUE:0.00016; BITSCORE: 21.7"
/note="Pfam_scan:hit_21 (2781..2817);
Pfam:PF05593.9:RHS_repeat;
Pfam_type:Repeat;HMM_aln_Length:37; HMM_Length:38;
EVALUE:1.3e-05; BITSCORE: 25.1"
/note="GO_domain:GO:0008150"
BEGIN
1 MPRRLRLWID PFAALQDLRA FVAARCRAAW RRLGTGPEFD DRVRPVKLEL RPMDWRNPPS
61 ETIGGTALPL AVTAAAAAAA VYFAATFEAH DAHAAAAAQA EGVLGYDTTH GLVLPIVEPE
121 PSATGPVNSD PGAALDGAGS TLRTDLDDPV RAGAGAFDDF GSGDAPETEG GMFSGSGAGG
181 MTAGTTGSSA PNDFDGPAAL GLTGFNGLAG LGGATTPGFY PLSAGLAGTG IPAAGNTTTG
241 AAGAADPTVS GAAPGATGNG SGTGGPTGDG GLFGNPERRP GTILNYDTTT QPVRFVQNAG
301 QWADGLDFVV RGAGYQVALA RDAATIGLPR TATDAERARL GGGTVFDALR LEWSGASPDA
361 RARGEGALGS VSNYLSGADP TGWRTGVAEF SAVRYADLWA GVDLVYHGAG ARQLEYDLVV
421 KPGASSAGVG FAVRGADARV DEEGRLVLTT AAGTELVQDA PVVYQTGADG ARTAVAGAYR
481 VRADGSIGFE VGEYDRAREL VIDPVLGYTS AFGGTGADVA YGVAADAAGN AYAVGYTESA
541 NFPVTGGAFD TTFGANRDAF VAKLGPTGSI VWASYLGGSG GPSGSDEAHG VALGSDGSVY
601 VVGQTSSSNF PTTAGAFMPT SGGGSLPYDA FVTKMAPDGT TLTYSSYLGG AGSDFAYGVA
661 VDRSSGEAVV VGYTSKPPFG TDFPTLNAAQ GTRSGNRDAF VTRFNAAGST LVFSTFLGGS
721 ASVLETGYGV ALESSGAIDV VGVTDSADFP VPGSGYDRVL AGGSDAFLVR YSAAGAVLAG
781 TLYGGSGDET GYAVAVDRTD RVYVTGSTTS TDLPTRNPVQ GTSGGGQDAF VARFTGLSAA
841 PEFATYQGGS GTDTGYGIAA DADGRAVVVG TSGGVVRYTP LGTAIDYTGT GSGLSAGFAA
901 AVSGDAMYGA GSNGFSDAIV VRFGPVPAPV ITGFADDTGS SNSDRLTYDT TPTVNGTAPA
961 SSTVSVYRRA TGTAAPVLLG TATATAGGLW TYTLATMSGD GAYALTATAT VSGQVSAPSA
1021 PLTFTLDTTA PGVAVSVATQ TYDRRPPITV TASDLYGLST AGTVVLDVDL NGDNDYLDPG
1081 EANFATGTLT NGAVTFESYS TYLTVGVTAH VRARALDRAG NEGTSAVRSV LVSASPTSWA
1141 VTSATPDARS GYGGAYGWTT VTDALVYAGN VTASVALDLD MSTSACGCQN PYLVYNSQEA
1201 APAPTVQARL QSDSALGVPT QVLGTLTWDG AVVGTVSYDL TALSPGGEWV FGLAPTTSLG
1261 TGRHTYALDL FVDYTGTVND VSRSATGQTF LVDRSNSAYG AGWSFSNTDA LVTVAASGAY
1321 PAGLLRLYGK GGWAFYPSAG AGAYTSPAGD AGALATFGSG WRYTNWDGKV LTFDASGRMT
1381 TWTSPDGTET LTYTYDGAGT GTAMRVATMA GPDGGVATFA YSGALLSSVL APGARTTTFA
1441 LSGTDLVTVT DPTARTHTFA YAAHRLTGET ATGVATAYSY ANGLAQTVQV GTDPVATVTA
1501 ALATGVGKAG TVTGGGIRGV YTDPLANGTV YAFNKFGQPV QRVAPDGGKE SYARDANGYV
1561 TGYTDQLDRV TTYTVNARGQ MTGVVNPDLT VATYIYGGAN GALSAYMDSR GGLWTYTSDS
1621 FGRPTTSKDP LGRVTTYTYA SGLLQTTVDG LGNVVTYQYD AARRRTGALS GGAVTGTTGY
1681 DAAGNAVTWV DAFGKTTTTA YDKAGRVTAV TDALGKTTTS VYATSGQLLS TTDPVGNVTS
1741 YVYDASGRLV VTIEAYGTLL ERRTTSVYDG VGNLIATVDP LGHRTTTLLD SLYRVSAIVD
1801 ALGNRTTTAY DLLGQVGASI DPLGRLTRFG YDSQGRQITV TDALGNVSST VYDADSHVIA
1861 TVDPLGHRTT SVYDGAGQLI ASVDALGKAT SFGYDKAGQQ ITVTDPRGNV TTTQYDARGR
1921 AEAVIDGAGK RATTVFDVAD RVTATVDPRG NRTSYSYDSV GRVVEVQDAL GKVTSTVYDA
1981 AGRTIATVDT RGNRTTTGYD ALSRVSTTQD VLGNYTTSVY DAADRVIAVV DARGNRVTSV
2041 YDDVDREIAT VDALGNRSTC VYDAAGNMIV SLNAKGYATT STYDGLNRVI ATTDPLGAVS
2101 SVSFDAAGRV VTKTDPRGNV TTVVYDDANR VVEVVDALGN RSTTVYDEAG NATVTVDALG
2161 RRTTSTFDSL NRVVTVKDAL NQVSTIVYDE AGNVVSVTDP LNHTTTSTYD RLNRVSVVTD
2221 ARNKSTTTTY DETGNVRTVT DPLNHTTTWV YDQLNRVSVV TDARNKSTTT TYDEAGNVRT
2281 VTDPLNRVTT YGYDARNLQV ARTDPAGKVW TTQYDELGRA WRQVDPLGND ARTYFDAAGR
2341 AAESADALGN RRTTVFDNAG NAVAAVDPLG NRTTVTFDAL NRAVAMQDAL GFRSTSLYDA
2401 VGNVTVTVDA LNRRTTTAFD ALNRVVTVKD ARNGVTSTTY DKAGNVATRT DPLGHTTSYG
2461 YDTVNRLVTT TDPLGKVVTT AYDDAGNITA STDPLNHTTS WVYDELNRSV ETVDPLNNRT
2521 TSVYDAAGQL SASVDARGNR TSYTYDPRGL VQTATDPFGK ITTSVYDAAG NRTAVTNTRG
2581 FTTTSAYDVL NRVLATTDAL GNTTTSVYDA AGNVVATIDA LGYRATSVYD QLNRVVASVD
2641 ALGNRATVGY DAVGNVASRT DGLNRVTSYG YDELDRAITE TDPRGFTTTS AYDAAGNRTG
2701 VIDALGNRTT WVYDPADRVI TETDPFGASA TYAFDAAGRR TSETDRLGRR RDYTYDDANR
2761 VATEKWYAVG GALTQTQTWT YDKAGNMLTA VDPDGAYTLT YDALNRVITV QEPFGLTLTM
2821 GYDFVGNRTS VQDSKNGFTT VTFDGLDRQT SEQTAGTGVS ATRFDYAYTA RSEVASLTRY
2881 SNLAGTTVVG TTTYDYDAAG RETHLKSTSG SGTVLANYTY TFDAADQMTA KQENGTTTSY
2941 SYDAAGQLTA DGATTYGYDK TGNRTNTGYV TGSGNRMTSD GVWTYTYDAN GNVVKRSKGA
3001 SSDTWVYGFD NRNQMTSAAY SASDGGTVSQ RVTYVYDAFG NRIERDAWNG TTTVERYAMD
3061 GWDPAKPNAV GTENFDTWVD MDNVNALTVR RMFGTGSDEQ IARQTSSGTI LWYLNDPQQS
3121 VRQLTDNTGN LVGTLAYSAF GQLTASSGTL DRYRFTSREV DVVTGFQYSR GRNYDAFSGK
3181 WLSADPLSFA AGDANLYRYV GNQPTTRTDP SGLQMASSVV TNAGAAIAGG VFAAVAARGR
3241 IQEVFLDQKD SKSVIESTGG KIEGSLAYVM GSKLAIHRAK IVIPLPLSQA VCDDIKVRIS
3301 TDSGSAASAA IGGGPMALVN GPGLTYGFPG GIAKNVKIDR TAKEVTIDIF GIDPDRLLPE
3361 EINKYSMRLN WQISFQGGAD GTWVKIPNSN YNHYVIYTTW KTPKIADTRL YQDFLDAGVR
3421 GAGGKKPSNE LQAVDLLFGA FRNRRFQGSN GKPVSYYKNG GVHLENRVGA RDLLISCDGQ
3481 CDDWANLFVK VLRAQGIEPK GNNGIWTYST DDNKNKNLRE WFLVKGQWQF NGNPPVKMIK
3541 SVTVGGKDYE YANVREKGRE AWARFNGAGS VSVPTSFLSK PFPPMVTYKK GVGEPVGQNT
3601 QNPFPSFTNH VVVFWGPDGG RIPSFVPFIG GLNRIYDPSY GTVSAKTAFV DNAIFAYVIP
3661 AETKLSNVRK TAKGEDGQVV SVWLFRTPDA TDNDTKRWVK SEER
//