LOCUS VTR91646.1 190 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma factor : RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Chitinophaga pinensis
(strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034)
GN=Cpin_5462 PE=4 SV=1: Sigma70_r2: Sigma70_r4_2 protein.
ACCESSION LR593886-947
PROTEIN_ID VTR91646.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_60680"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|C7PUY2|C7PUY2_CHIPD ;
ALN/Q_length_ratio=0.832 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Chitinophaga pinensis
(strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034)
GN=Cpin_5462 PE=4 SV=1 ; EVALUE=2e-14 ;
Q/S_length_ratio=1.111"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|F4KP58|F4KP58_HALH1 ;
ALN/Q_length_ratio=0.832 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Haliscomenobacter
hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O)
GN=Halhy_0951 PE=4 SV=1 ; EVALUE=5e-13 ;
Q/S_length_ratio=1.131"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A0A010ZWA3|A0A010ZWA3_9ACTO ;
ALN/Q_length_ratio=0.689 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Cryptosporangium arvum
DSM 44712 GN=CryarDRAFT_2612 PE=4 SV=1 ; EVALUE=5e-13 ;
Q/S_length_ratio=0.955"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|A0Z1H3|A0Z1H3_9GAMM ;
ALN/Q_length_ratio=0.805 ; DESCRIPTION=RNA polymerase
sigma-70 factor OS=marine gamma proteobacterium HTCC2080
GN=MGP2080_07122 PE=4 SV=1 ; EVALUE=5e-12 ;
Q/S_length_ratio=1.145"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|A0A085WUN8|A0A085WUN8_9DELT ;
ALN/Q_length_ratio=0.947 ; DESCRIPTION=RNA polymerase
sigma factor OS=Hyalangium minutum GN=DB31_3531 PE=3 SV=1
; EVALUE=7e-12 ; Q/S_length_ratio=0.892"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|A0A085X6Y6|A0A085X6Y6_9DELT ;
ALN/Q_length_ratio=0.947 ; DESCRIPTION=RNA polymerase
sigma factor OS=Enhygromyxa salina GN=DB30_5823 PE=3 SV=1
; EVALUE=7e-12 ; Q/S_length_ratio=0.892"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|D6Z9B7|D6Z9B7_SEGRD ;
ALN/Q_length_ratio=0.779 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Segniliparus rotundus
(strain ATCC BAA-972 / CDC 1076 / CIP 108378 / DSM 44985 /
JCM 13578) GN=Srot_2092 PE=4 SV=1 ; EVALUE=1e-11 ;
Q/S_length_ratio=0.841"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|W7IXN3|W7IXN3_9PSEU ;
ALN/Q_length_ratio=0.689 ; DESCRIPTION=RNA polymerase
sigma-70 factor OS=Actinokineospora sp. EG49 GN=UO65_3492
PE=4 SV=1 ; EVALUE=2e-11 ; Q/S_length_ratio=0.979"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L8TSN6|L8TSN6_9MICC ;
ALN/Q_length_ratio=0.726 ; DESCRIPTION=RNA polymerase,
sigma subunit, ECF family protein OS=Arthrobacter sp.
SJCon GN=G205_10503 PE=4 SV=1 ; EVALUE=3e-11 ;
Q/S_length_ratio=1.118"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|F1Z6L0|F1Z6L0_9SPHN ;
ALN/Q_length_ratio=0.689 ; DESCRIPTION=RNA polymerase
sigma factor OS=Novosphingobium nitrogenifigens DSM 19370
GN=Y88_2454 PE=4 SV=1 ; EVALUE=3e-11 ;
Q/S_length_ratio=1.011"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|J7LYE4|J7LYE4_9MICC ;
ALN/Q_length_ratio=0.747 ; DESCRIPTION=RNA polymerase
sigma-E factor RpoE OS=Arthrobacter sp. Rue61a GN=rpoE2
PE=4 SV=1 ; EVALUE=1e-10 ; Q/S_length_ratio=0.918"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|F8JGT3|F8JGT3_HYPSM ;
ALN/Q_length_ratio=0.863 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Hyphomicrobium sp.
(strain MC1) GN=HYPMC_2360 PE=4 SV=1 ; EVALUE=1e-10 ;
Q/S_length_ratio=0.905"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|A1R8D0|A1R8D0_ARTAT ;
ALN/Q_length_ratio=0.747 ; DESCRIPTION=Putative RNA
polymerase ECF-subfamily sigma factor OS=Arthrobacter
aurescens (strain TC1) GN=AAur_2780 PE=4 SV=1 ;
EVALUE=1e-10 ; Q/S_length_ratio=0.918"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|H0QS47|H0QS47_ARTGO ;
ALN/Q_length_ratio=0.747 ; DESCRIPTION=Putative RNA
polymerase ECF-type sigma factor OS=Arthrobacter
globiformis NBRC 12137 GN=ARGLB_085_02170 PE=4 SV=1 ;
EVALUE=1e-10 ; Q/S_length_ratio=0.927"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|U2A4M7|U2A4M7_9MICC ;
ALN/Q_length_ratio=0.889 ; DESCRIPTION=RNA polymerase
sigma factor SigE OS=Arthrobacter sp. AK-YN10
GN=M707_07290 PE=4 SV=1 ; EVALUE=2e-10 ;
Q/S_length_ratio=1.027"
/note="Pfam_scan:hit_1 (27..95);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:52; HMM_Length:71;
EVALUE:2.9e-05; BITSCORE: 23.6"
/note="Pfam_scan:hit_2 (123..176);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:51; HMM_Length:54;
EVALUE:1.1e-17; BITSCORE: 63.2"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MEPERYEELR DGLKRGCSEA WREFTAAVLG PVAVFFRAAL RGEELVEDLT NETVRRLLEH
61 ADVLDRAFPE LLAWVQRVAR NLVLDGHQAR ARWRRAADVQ RVRLLRAGHE PPPGVGEGTG
121 DTIGRLWSAL ERLPEHYRLV LVLCYVQGHS HEEIAGALGM SVSAVNSRLF AARRALREAL
181 GTDPRAPEAS
//