LOCUS VTR91579.1 205 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : Uncharacterized protein OS=Blastopirellula marina
DSM 3645 GN=DSM3645_26594 PE=4 SV=1: Sigma70_r4_2 protein.
ACCESSION LR593886-880
PROTEIN_ID VTR91579.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_61350"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|A3ZY49|A3ZY49_9PLAN ;
ALN/Q_length_ratio=0.985 ; DESCRIPTION=Uncharacterized
protein OS=Blastopirellula marina DSM 3645
GN=DSM3645_26594 PE=4 SV=1 ; EVALUE=1e-68 ;
Q/S_length_ratio=0.995"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DGW7|L0DGW7_SINAD ;
ALN/Q_length_ratio=0.961 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4435 PE=4 SV=1 ; EVALUE=4e-67 ;
Q/S_length_ratio=0.953"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A3ZSI4|A3ZSI4_9PLAN ;
ALN/Q_length_ratio=0.834 ; DESCRIPTION=Uncharacterized
protein OS=Blastopirellula marina DSM 3645
GN=DSM3645_14900 PE=4 SV=1 ; EVALUE=1e-14 ;
Q/S_length_ratio=0.976"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|F0SIF8|F0SIF8_PLABD ;
ALN/Q_length_ratio=0.756 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Planctomyces
brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /
NBRC 103401 / IFAM 1448) GN=Plabr_0926 PE=4 SV=1 ;
EVALUE=7e-14 ; Q/S_length_ratio=1.228"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|F0SMW5|F0SMW5_PLABD ;
ALN/Q_length_ratio=0.937 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Planctomyces brasiliensis
(strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 /
IFAM 1448) GN=Plabr_2367 PE=4 SV=1 ; EVALUE=7e-13 ;
Q/S_length_ratio=0.981"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|A3ZWH9|A3ZWH9_9PLAN ;
ALN/Q_length_ratio=0.746 ; DESCRIPTION=Uncharacterized
protein OS=Blastopirellula marina DSM 3645
GN=DSM3645_26329 PE=4 SV=1 ; EVALUE=5e-12 ;
Q/S_length_ratio=1.015"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|F0SLP7|F0SLP7_PLABD ;
ALN/Q_length_ratio=0.732 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Planctomyces
brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /
NBRC 103401 / IFAM 1448) GN=Plabr_1172 PE=4 SV=1 ;
EVALUE=1e-10 ; Q/S_length_ratio=1.057"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|A3ZX69|A3ZX69_9PLAN ;
ALN/Q_length_ratio=0.820 ; DESCRIPTION=Uncharacterized
protein OS=Blastopirellula marina DSM 3645
GN=DSM3645_27758 PE=4 SV=1 ; EVALUE=2e-10 ;
Q/S_length_ratio=1.020"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DID4|L0DID4_SINAD ;
ALN/Q_length_ratio=0.746 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5005 PE=4 SV=1 ; EVALUE=7e-09 ;
Q/S_length_ratio=1.025"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|M5T5F6|M5T5F6_9PLAN ;
ALN/Q_length_ratio=0.644 ; DESCRIPTION=RNA polymerase
sigma-70 domain protein OS=Rhodopirellula sp. SWK7
GN=RRSWK_03146 PE=4 SV=1 ; EVALUE=2e-08 ;
Q/S_length_ratio=1.185"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|A0A0A6FAD7|A0A0A6FAD7_9SPHN ;
ALN/Q_length_ratio=0.507 ; DESCRIPTION=FecI sigma-24
factor OS=Sphingomonas sp. Ant20 GN=NI18_00635 PE=4 SV=1 ;
EVALUE=3e-07 ; Q/S_length_ratio=1.051"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|B4RF73|B4RF73_PHEZH ;
ALN/Q_length_ratio=0.380 ; DESCRIPTION=RNA polymerase
sigma-70 factor, ECF subfamily OS=Phenylobacterium
zucineum (strain HLK1) GN=PHZ_c2233 PE=4 SV=1 ;
EVALUE=4e-06 ; Q/S_length_ratio=1.152"
/note="Pfam_scan:hit_1 (135..188);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:52; HMM_Length:54;
EVALUE:1.3e-13; BITSCORE: 50.1"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MTDDRTSFAV QRYLDDLAGG GPADAIVRAL LDRAARRLHR LCASVLHRGY PRLARPPLNV
61 QSEEMLGAVV ERLLKALREA RPTSVRQFFS LAAQHTRWEL NDLARRLDGE PRAGDVADDL
121 IPAPADSASG LSPDCRRIIE SIEALPADER EAFDLVRVQG LTQVEAAEVL GVAVKTVKRR
181 LDRGLRLLTE RLGDLRPDAA ERDPS
//