LOCUS VTR91356.1 199 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma-70 ecf-like protein
: DNA-directed RNA polymerase specialized sigma subunit,
sigma24 OS=Singulisphaera acidiphila (strain ATCC BAA-
1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_3738 PE=
4 SV=1: Sigma70_ECF protein.
ACCESSION LR593886-657
PROTEIN_ID VTR91356.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_63580"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DH37|L0DH37_SINAD ;
ALN/Q_length_ratio=0.889 ; DESCRIPTION=DNA-directed RNA
polymerase specialized sigma subunit, sigma24
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_3738 PE=4 SV=1 ;
EVALUE=6e-47 ; Q/S_length_ratio=0.990"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|M5UAE9|M5UAE9_9PLAN ;
ALN/Q_length_ratio=0.950 ; DESCRIPTION=Transcription
regulator LuxR OS=Rhodopirellula sallentina SM41
GN=RSSM_00164 PE=4 SV=1 ; EVALUE=4e-28 ;
Q/S_length_ratio=0.971"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|M5T710|M5T710_9PLAN ;
ALN/Q_length_ratio=0.950 ; DESCRIPTION=RNA polymerase
sigma-70 OS=Rhodopirellula sp. SWK7 GN=RRSWK_02458 PE=4
SV=1 ; EVALUE=6e-27 ; Q/S_length_ratio=0.961"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|A6C775|A6C775_9PLAN ;
ALN/Q_length_ratio=0.889 ; DESCRIPTION=Serine/threonine
protein kinase OS=Planctomyces maris DSM 8797
GN=PM8797T_04305 PE=4 SV=1 ; EVALUE=1e-22 ;
Q/S_length_ratio=0.424"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|A6BYS8|A6BYS8_9PLAN ;
ALN/Q_length_ratio=0.925 ; DESCRIPTION=Uncharacterized
protein OS=Planctomyces maris DSM 8797 GN=PM8797T_27884
PE=4 SV=1 ; EVALUE=8e-16 ; Q/S_length_ratio=0.985"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0D9Z6|L0D9Z6_SINAD ;
ALN/Q_length_ratio=0.980 ; DESCRIPTION=DNA-directed RNA
polymerase specialized sigma subunit, sigma24
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_1052 PE=4 SV=1 ;
EVALUE=3e-15 ; Q/S_length_ratio=0.943"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|M5UBY8|M5UBY8_9PLAN ;
ALN/Q_length_ratio=0.960 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula sallentina
SM41 GN=RSSM_05025 PE=4 SV=1 ; EVALUE=5e-15 ;
Q/S_length_ratio=0.952"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M5UKU6|M5UKU6_9PLAN ;
ALN/Q_length_ratio=0.970 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula sallentina
SM41 GN=RSSM_01892 PE=4 SV=1 ; EVALUE=8e-14 ;
Q/S_length_ratio=0.934"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M5T6W2|M5T6W2_9PLAN ;
ALN/Q_length_ratio=0.970 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula sp. SWK7
GN=RRSWK_02891 PE=4 SV=1 ; EVALUE=1e-12 ;
Q/S_length_ratio=0.975"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|M5TDX7|M5TDX7_9PLAN ;
ALN/Q_length_ratio=0.970 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula sp. SWK7
GN=RRSWK_00331 PE=4 SV=1 ; EVALUE=8e-12 ;
Q/S_length_ratio=0.930"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M5TIM4|M5TIM4_9PLAN ;
ALN/Q_length_ratio=0.980 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula sp. SWK7
GN=RRSWK_03780 PE=4 SV=1 ; EVALUE=3e-11 ;
Q/S_length_ratio=0.943"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|M5SVC9|M5SVC9_9PLAN ;
ALN/Q_length_ratio=0.975 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula sp. SWK7
GN=RRSWK_06786 PE=4 SV=1 ; EVALUE=3e-11 ;
Q/S_length_ratio=0.793"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|E8R6W5|E8R6W5_ISOPI ;
ALN/Q_length_ratio=0.889 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Isosphaera pallida
(strain ATCC 43644 / DSM 9630 / IS1B) GN=Isop_3752 PE=4
SV=1 ; EVALUE=8e-11 ; Q/S_length_ratio=0.930"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|A0A090KMS8|A0A090KMS8_9BACT ;
ALN/Q_length_ratio=0.915 ; DESCRIPTION=Uncultured
bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1 ; EVALUE=2e-10 ;
Q/S_length_ratio=0.985"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M5T897|M5T897_9PLAN ;
ALN/Q_length_ratio=0.874 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula sp. SWK7
GN=RRSWK_02117 PE=4 SV=1 ; EVALUE=2e-10 ;
Q/S_length_ratio=0.854"
/note="Pfam_scan:hit_1 (4..198);
Pfam:PF07638.6:Sigma70_ECF;
Pfam_type:Family;HMM_aln_Length:179; HMM_Length:185;
EVALUE:3e-13; BITSCORE: 49.8"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MSVNDSFAAL MGRLRSGEDG AAREVFVRFA SRLAGLARSH LDAKLAVKVD PEDVVQSAYK
61 SFFLRQRDGH LDVGTWDGLW GVLTMITLRK CADRAAYYRA EKRNVSRETT GGGAEDSAPA
121 FVDLALDREP LPDEAAALAE TVDALFRAIE DPDERAILEL SLQGHTATEI SEQLGRAERS
181 VRRLRERVRK RLERMQSEV
//