LOCUS VTR91218.1 832 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_0869 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2 protein.
ACCESSION LR593886-519
PROTEIN_ID VTR91218.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_64960"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.287 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=2e-35 ;
Q/S_length_ratio=1.726"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.310 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=3e-35 ;
Q/S_length_ratio=1.355"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.346 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=3e-34 ;
Q/S_length_ratio=1.887"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.310 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=4e-33 ;
Q/S_length_ratio=0.932"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.290 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=6e-33 ;
Q/S_length_ratio=0.755"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.305 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=1e-31 ;
Q/S_length_ratio=1.486"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DT29|L0DT29_SINAD ;
ALN/Q_length_ratio=0.335 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7487 PE=4 SV=1 ; EVALUE=5e-30 ;
Q/S_length_ratio=1.671"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.333 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=4e-28 ;
Q/S_length_ratio=0.678"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.320 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=5e-28 ;
Q/S_length_ratio=1.962"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DQA3|L0DQA3_SINAD ;
ALN/Q_length_ratio=0.314 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6979 PE=4 SV=1 ; EVALUE=5e-28 ;
Q/S_length_ratio=1.870"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DIV6|L0DIV6_SINAD ;
ALN/Q_length_ratio=0.195 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4570 PE=4 SV=1 ; EVALUE=6e-27 ;
Q/S_length_ratio=1.657"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0D7L2|L0D7L2_SINAD ;
ALN/Q_length_ratio=0.362 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0185 PE=4 SV=1 ; EVALUE=1e-26 ;
Q/S_length_ratio=1.661"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DPR4|L0DPR4_SINAD ;
ALN/Q_length_ratio=0.371 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6601 PE=4 SV=1 ; EVALUE=1e-26 ;
Q/S_length_ratio=1.373"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DHB8|L0DHB8_SINAD ;
ALN/Q_length_ratio=0.306 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3834 PE=4 SV=1 ; EVALUE=1e-26 ;
Q/S_length_ratio=1.502"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DDY6|L0DDY6_SINAD ;
ALN/Q_length_ratio=0.297 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2787 PE=4 SV=1 ; EVALUE=3e-26 ;
Q/S_length_ratio=1.524"
/note="Pfam_scan:hit_1 (37..105);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:70; HMM_Length:71;
EVALUE:1.5e-12; BITSCORE: 46.9"
/note="Pfam_scan:hit_2 (126..179);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:51; HMM_Length:54;
EVALUE:1.2e-11; BITSCORE: 43.8"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MRTAAAVYRE LIPDRRTDGE LLAAFISERS EPAFIELVRR HGPLVWGACR RLLPDPADAE
61 DAFQAAFLVL VRRAHQAARN GAVGPWLHRV AVWTARNARR KNARRLARQH ALVEDAPLFA
121 PDGDLRADID GALLALPARY RDPIILCHLQ GYSRREAAER LGCAEGTLSA WLNRGLAKLR
181 TRLRDFDPTK VLPVLAAGAV PAALAASTAR AAAVSTVAAV TVTPAVSSIV EGVLQMLWMK
241 KATAASFALC AVFAMGVGVG LGTRPSYTGA VAQDGDPVIG VAVSPQNDPK PKPNAQPNPK
301 ANPQPKPSPA ETLAAIEKQA QAAQAELQRL IELRKQIDSE ISPTTAELEA LQRYIARAKG
361 REKPDEHAAL EKMIREKEAQ HRNALVGVEA ATKKAEHYKA QQGVDPKALA EDKQAVERFQ
421 KNAEAKAAEL KELKEKLGKL SKIEKPDVAK ELKALKDEEL ALQNKLKLAT DLKLKEEKLG
481 VQKGAEKLAA ANDTVALESM IRAKEAQHQA FLTALKSLGN SKLSDPNEAM ALKGVVEQLQ
541 KSADASAAEL KSLKDQLAKL KGAKPAQEQR TEKEIKEAKE KLQERNRDKE LKEKDKELKE
601 KLQERNRDKE LKDKEINQDK ALAEIQAQLE RLVAEKQRLV AQSKATEKQI ADAEAALREY
661 QRKTQLMLAE KMLAEKRVAE ASRKIVTGGG GYIELTIAGK AGAFEFTITE VPAGDSKARR
721 LQAKFGPVST RDPAALAVLL ARAKKDSGGP QEVRVIAQPQ TVLGAGPVAA LEACDKAGYK
781 TVKFTGYVFG GGFATELKSD QKGEVRGYKR YDGTEVRPKE LAEEIQEGLR RL
//