LOCUS VTR91028.1 163 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_0937 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2 protein.
ACCESSION LR593886-329
PROTEIN_ID VTR91028.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_66860"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0D8Z5|L0D8Z5_SINAD ;
ALN/Q_length_ratio=0.982 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0937 PE=4 SV=1 ; EVALUE=1e-44 ;
Q/S_length_ratio=0.896"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DFT7|L0DFT7_SINAD ;
ALN/Q_length_ratio=0.957 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3250 PE=4 SV=1 ; EVALUE=4e-40 ;
Q/S_length_ratio=0.942"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|X0SS88|X0SS88_9ZZZZ ;
ALN/Q_length_ratio=0.926 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S01H1_L00478 OS=marine sediment
metagenome GN=S01H1_04348 PE=4 SV=1 ; EVALUE=2e-37 ;
Q/S_length_ratio=0.959"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0D6L3|L0D6L3_SINAD ;
ALN/Q_length_ratio=0.975 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0043 PE=4 SV=1 ; EVALUE=3e-15 ;
Q/S_length_ratio=0.988"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|B4CU29|B4CU29_9BACT ;
ALN/Q_length_ratio=0.908 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Chthoniobacter flavus
Ellin428 GN=CfE428DRAFT_0192 PE=4 SV=1 ; EVALUE=2e-13 ;
Q/S_length_ratio=0.811"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|R7E2S3|R7E2S3_9BACT ;
ALN/Q_length_ratio=0.969 ; DESCRIPTION=RNA polymerase
sigma-24 subunit ECF subfamily OS=Akkermansia sp. CAG:344
GN=BN616_02512 PE=4 SV=1 ; EVALUE=3e-13 ;
Q/S_length_ratio=0.807"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|B2UN48|B2UN48_AKKM8 ;
ALN/Q_length_ratio=0.963 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Akkermansia muciniphila
(strain ATCC BAA-835) GN=Amuc_1842 PE=4 SV=1 ;
EVALUE=2e-12 ; Q/S_length_ratio=0.799"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|R6IY53|R6IY53_9BACT ;
ALN/Q_length_ratio=0.963 ; DESCRIPTION=RNA polymerase
sigma-24 subunit ECF subfamily OS=Akkermansia muciniphila
CAG:154 GN=BN502_01598 PE=4 SV=1 ; EVALUE=2e-12 ;
Q/S_length_ratio=0.799"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|B5JHT1|B5JHT1_9BACT ;
ALN/Q_length_ratio=0.902 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Verrucomicrobiae
bacterium DG1235 GN=VDG1235_1406 PE=4 SV=1 ; EVALUE=6e-12
; Q/S_length_ratio=1.045"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|F7UG04|F7UG04_RHIRD ;
ALN/Q_length_ratio=0.791 ; DESCRIPTION=Sigma factor
OS=Agrobacterium tumefaciens F2 GN=rpoE PE=4 SV=1 ;
EVALUE=2e-10 ; Q/S_length_ratio=0.982"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|M5RKA2|M5RKA2_9PLAN ;
ALN/Q_length_ratio=0.350 ; DESCRIPTION=RNA polymerase
sigma factor 70, region 4 type 2 domain protein (Fragment)
OS=Rhodopirellula maiorica SM1 GN=RMSM_03331 PE=4 SV=1 ;
EVALUE=3e-10 ; Q/S_length_ratio=2.329"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|B4D3T3|B4D3T3_9BACT ;
ALN/Q_length_ratio=0.865 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Chthoniobacter flavus
Ellin428 GN=CfE428DRAFT_3571 PE=4 SV=1 ; EVALUE=5e-10 ;
Q/S_length_ratio=1.012"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|A0A034UB49|A0A034UB49_9NOCA ;
ALN/Q_length_ratio=1.012 ; DESCRIPTION=RNA polymerase
sigma factor OS=Nocardia brasiliensis NBRC 14402 GN=sigL
PE=3 SV=1 ; EVALUE=9e-10 ; Q/S_length_ratio=0.964"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|U3H5V1|U3H5V1_PSEAC ;
ALN/Q_length_ratio=0.853 ; DESCRIPTION=Uncharacterized
protein OS=Pseudomonas alcaligenes OT 69 GN=L682_21295
PE=4 SV=1 ; EVALUE=9e-10 ; Q/S_length_ratio=0.959"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|K0FEH9|K0FEH9_9NOCA ;
ALN/Q_length_ratio=0.963 ; DESCRIPTION=RNA polymerase
sigma factor OS=Nocardia brasiliensis ATCC 700358
GN=O3I_041005 PE=3 SV=1 ; EVALUE=1e-09 ;
Q/S_length_ratio=0.964"
/note="Pfam_scan:hit_1 (9..72); Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:70; HMM_Length:71;
EVALUE:3.9e-10; BITSCORE: 39.1"
/note="Pfam_scan:hit_2 (97..150);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:49; HMM_Length:54;
EVALUE:2.2e-08; BITSCORE: 33.4"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MGPDQLAALV DRYAAALVLY ARQWCACPED VVQTAFLKLV RIGTPPDNLL PWLYRVVRNG
61 AIDASRAARR RTRYESAAAD SAPKWFSPSY DPTGLDAQAA SASLAHLPAE TREIIVAHLW
121 GGLTFEQIAE AVGSSAATCY RRYAAGLEVL RQKLGAERPA HAK
//