LOCUS VTR91014.1 188 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma factor : RNA polymerase
sigma factor OS=Nitrospina gracilis (strain 3/211) GN=
NITGR_90035 PE=4 SV=1: Sigma70_r2: Sigma70_r4_2 protein.
ACCESSION LR593886-315
PROTEIN_ID VTR91014.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_67000"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|M1Z2C7|M1Z2C7_NITG3 ;
ALN/Q_length_ratio=0.936 ; DESCRIPTION=RNA polymerase
sigma factor OS=Nitrospina gracilis (strain 3/211)
GN=NITGR_90035 PE=4 SV=1 ; EVALUE=3e-34 ;
Q/S_length_ratio=0.908"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|E6PZN0|E6PZN0_9ZZZZ ;
ALN/Q_length_ratio=0.851 ; DESCRIPTION=Sigma-24, ECF
subfamily (Modular protein) OS=mine drainage metagenome
GN=CARN3_1414 PE=4 SV=1 ; EVALUE=7e-32 ;
Q/S_length_ratio=0.836"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|G2LHA4|G2LHA4_CHLTF ;
ALN/Q_length_ratio=0.851 ; DESCRIPTION=RNA polymerase
sigma factor OS=Chloracidobacterium thermophilum (strain
B) GN=Cabther_A1416 PE=3 SV=1 ; EVALUE=8e-32 ;
Q/S_length_ratio=0.761"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|D0LKU5|D0LKU5_HALO1 ;
ALN/Q_length_ratio=0.840 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Haliangium ochraceum
(strain DSM 14365 / JCM 11303 / SMP-2) GN=Hoch_4167 PE=4
SV=1 ; EVALUE=2e-31 ; Q/S_length_ratio=0.917"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|C1F3F9|C1F3F9_ACIC5 ;
ALN/Q_length_ratio=0.856 ; DESCRIPTION=RNA polymerase
sigma factor OS=Acidobacterium capsulatum (strain ATCC
51196 / DSM 11244 / JCM 7670) GN=ACP_0949 PE=4 SV=1 ;
EVALUE=7e-31 ; Q/S_length_ratio=0.959"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|Q1INR3|Q1INR3_KORVE ;
ALN/Q_length_ratio=0.910 ; DESCRIPTION=Sigma-24, ECF
subfamily OS=Koribacter versatilis (strain Ellin345)
GN=Acid345_2486 PE=4 SV=1 ; EVALUE=1e-30 ;
Q/S_length_ratio=0.931"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|A0A017TAK3|A0A017TAK3_9DELT ;
ALN/Q_length_ratio=0.904 ; DESCRIPTION=RNA polymerase
sigma factor RpoE OS=Chondromyces apiculatus DSM 436
GN=CAP_2147 PE=4 SV=1 ; EVALUE=2e-30 ;
Q/S_length_ratio=0.931"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|E8WWK7|E8WWK7_GRATM ;
ALN/Q_length_ratio=0.809 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Granulicella tundricola
(strain ATCC BAA-1859 / DSM 23138 / MP5ACTX9)
GN=AciX9_2646 PE=4 SV=1 ; EVALUE=2e-30 ;
Q/S_length_ratio=0.883"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|D8EVT7|D8EVT7_9DELT ;
ALN/Q_length_ratio=0.926 ; DESCRIPTION=Putative RNA
polymerase sigma factor SigW OS=delta proteobacterium
NaphS2 GN=NPH_0685 PE=4 SV=1 ; EVALUE=8e-30 ;
Q/S_length_ratio=0.926"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|G8NR08|G8NR08_GRAMM ;
ALN/Q_length_ratio=0.809 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Granulicella mallensis
(strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8)
GN=AciX8_0643 PE=4 SV=1 ; EVALUE=2e-29 ;
Q/S_length_ratio=0.855"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|U2TYB7|U2TYB7_9DELT ;
ALN/Q_length_ratio=0.867 ; DESCRIPTION=RNA polymerase
sigma-70 factor, ECF subfamily OS=Myxococcus sp.
(contaminant ex DSM 436) GN=A176_06017 PE=4 SV=1 ;
EVALUE=6e-29 ; Q/S_length_ratio=0.922"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|I0I4B0|I0I4B0_CALAS ;
ALN/Q_length_ratio=0.856 ; DESCRIPTION=RNA polymerase
sigma factor OS=Caldilinea aerophila (strain DSM 14535 /
JCM 11387 / NBRC 104270 / STL-6-O1) GN=CLDAP_20580 PE=3
SV=1 ; EVALUE=8e-29 ; Q/S_length_ratio=0.870"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|Q1CYD9|Q1CYD9_MYXXD ;
ALN/Q_length_ratio=0.867 ; DESCRIPTION=RNA polymerase
sigma-70 factor, ECF subfamily OS=Myxococcus xanthus
(strain DK 1622) GN=MXAN_6461 PE=4 SV=1 ; EVALUE=1e-28 ;
Q/S_length_ratio=0.866"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|F8CD38|F8CD38_MYXFH ;
ALN/Q_length_ratio=0.867 ; DESCRIPTION=ECF subfamily RNA
polymerase sigma factor OS=Myxococcus fulvus (strain ATCC
BAA-855 / HW-1) GN=LILAB_14245 PE=4 SV=1 ; EVALUE=1e-28 ;
Q/S_length_ratio=0.922"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|A0A075KH08|A0A075KH08_9FIRM ;
ALN/Q_length_ratio=0.883 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, RpoE, ECF subfamily OS=Pelosinus sp.
UFO1 GN=UFO1_3792 PE=4 SV=1 ; EVALUE=2e-28 ;
Q/S_length_ratio=0.891"
/note="Pfam_scan:hit_1 (14..83);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:67; HMM_Length:71;
EVALUE:1.5e-16; BITSCORE: 59.7"
/note="Pfam_scan:hit_2 (121..174);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:51; HMM_Length:54;
EVALUE:9.1e-14; BITSCORE: 50.6"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MVAPLPEKVT PELVFREYAP RIFNLARRML GNDADAEDVT QDVLLQVVRK LDSFRGDSQI
61 STWLHRVTVN AALAHRAKRA NRQKHESADL ADEALDAVAP ETEVKRWNLP PDEPVLAAEQ
121 QAIIEKAITE LPEPFRDVYL LADVEGLPNS DIGTMLGLSV PAVKSRLHRA RMRMRDLLAP
181 HFEEKDAS
//