LOCUS VTR90979.1 258 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma70 : RNA polymerase
sigma factor OS=Singulisphaera acidiphila (strain ATCC
BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_7408
PE=3 SV=1: Sigma70_r2: Sigma70_r3: Sigma70_r4 protein.
ACCESSION LR593886-280
PROTEIN_ID VTR90979.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_67350"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|H5SCU0|H5SCU0_9BACT ;
ALN/Q_length_ratio=0.988 ; DESCRIPTION=RNA polymerase
sigma factor OS=uncultured planctomycete GN=HGMM_F11G08C13
PE=3 SV=1 ; EVALUE=1e-140 ; Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DSV7|L0DSV7_SINAD ;
ALN/Q_length_ratio=0.988 ; DESCRIPTION=RNA polymerase
sigma factor OS=Singulisphaera acidiphila (strain ATCC
BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_7408
PE=3 SV=1 ; EVALUE=1e-140 ; Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|E8QXB1|E8QXB1_ISOPI ;
ALN/Q_length_ratio=0.988 ; DESCRIPTION=RNA polymerase
sigma factor OS=Isosphaera pallida (strain ATCC 43644 /
DSM 9630 / IS1B) GN=Isop_1367 PE=3 SV=1 ; EVALUE=1e-138 ;
Q/S_length_ratio=0.945"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|D5STZ2|D5STZ2_PLAL2 ;
ALN/Q_length_ratio=0.992 ; DESCRIPTION=RNA polymerase
sigma factor OS=Planctomyces limnophilus (strain ATCC
43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_1142 PE=3 SV=1
; EVALUE=1e-136 ; Q/S_length_ratio=0.996"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|A3ZZN5|A3ZZN5_9PLAN ;
ALN/Q_length_ratio=0.992 ; DESCRIPTION=RNA polymerase
sigma factor OS=Blastopirellula marina DSM 3645
GN=DSM3645_16080 PE=3 SV=1 ; EVALUE=1e-133 ;
Q/S_length_ratio=0.989"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|D2QYQ7|D2QYQ7_PIRSD ;
ALN/Q_length_ratio=0.969 ; DESCRIPTION=RNA polymerase
sigma factor OS=Pirellula staleyi (strain ATCC 27377 / DSM
6068 / ICPB 4128) GN=Psta_3555 PE=3 SV=1 ; EVALUE=1e-131 ;
Q/S_length_ratio=0.989"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|M5UA16|M5UA16_9PLAN ;
ALN/Q_length_ratio=0.988 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula sallentina SM41
GN=RSSM_00396 PE=3 SV=1 ; EVALUE=1e-123 ;
Q/S_length_ratio=0.949"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M5SVG0|M5SVG0_9PLAN ;
ALN/Q_length_ratio=0.988 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula sp. SWK7 GN=RRSWK_06524
PE=3 SV=1 ; EVALUE=1e-123 ; Q/S_length_ratio=0.949"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|K5C852|K5C852_RHOBT ;
ALN/Q_length_ratio=0.984 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula baltica SH28 GN=RBSH_05606
PE=3 SV=1 ; EVALUE=1e-122 ; Q/S_length_ratio=0.974"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|F2AS69|F2AS69_RHOBT ;
ALN/Q_length_ratio=0.984 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula baltica WH47
GN=RBWH47_03243 PE=3 SV=1 ; EVALUE=1e-122 ;
Q/S_length_ratio=0.949"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|M5SIU7|M5SIU7_9PLAN ;
ALN/Q_length_ratio=0.984 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula europaea SH398
GN=RESH_01754 PE=3 SV=1 ; EVALUE=1e-122 ;
Q/S_length_ratio=0.949"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M2A5N2|M2A5N2_9PLAN ;
ALN/Q_length_ratio=0.984 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula europaea 6C GN=RE6C_03675
PE=3 SV=1 ; EVALUE=1e-122 ; Q/S_length_ratio=0.949"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|Q7UFV6|Q7UFV6_RHOBA ;
ALN/Q_length_ratio=0.984 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula baltica (strain SH1)
GN=whiG PE=3 SV=1 ; EVALUE=1e-122 ;
Q/S_length_ratio=0.949"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L7CDN1|L7CDN1_RHOBT ;
ALN/Q_length_ratio=0.984 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula baltica SWK14
GN=RBSWK_03807 PE=3 SV=1 ; EVALUE=1e-122 ;
Q/S_length_ratio=0.974"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|M5R7Y1|M5R7Y1_9PLAN ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula maiorica SM1 GN=RMSM_07577
PE=3 SV=1 ; EVALUE=1e-121 ; Q/S_length_ratio=0.928"
/note="Pfam_scan:hit_1 (27..100);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:69; HMM_Length:71;
EVALUE:5.8e-15; BITSCORE: 54.6"
/note="Pfam_scan:hit_2 (106..188);
Pfam:PF04539.11:Sigma70_r3;
Pfam_type:Family;HMM_aln_Length:72; HMM_Length:78;
EVALUE:7.4e-10; BITSCORE: 38.5"
/note="Pfam_scan:hit_3 (198..246);
Pfam:PF04545.11:Sigma70_r4;
Pfam_type:Domain;HMM_aln_Length:45; HMM_Length:50;
EVALUE:2e-13; BITSCORE: 49.3"
/note="GO_domain:GO:0044281"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0016779"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0030154"
/note="GO_domain:GO:0048646"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005730"
/note="Enzyme_Code:EC:2.7.7.6"
BEGIN
1 MTQTETDIQA VWLEYRERPT VELRNRLVER YLSLVKYNAE RIWSRLPDGV ELDDLISAGV
61 FGLLDAIDAF DLTRGVKFET YCVPRIRGAM LDELRTMDWV PRLVRSKASK MEACRKQLEA
121 ALGRPPKPEE LAEKLGIPLD QLDSHLGEAT AVNLVSLNKK WYETDSYKDV REIDILEDKK
181 AEDPTGRLQN RDLMKLVTRG LNRNERLIVI LYYYEEMTMK EIGATLNLSE SRVSQMHSSI
241 VARLQAHLAK RKGEFNPN
//