LOCUS VTR90972.1 205 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_7049 PE=4 SV=1: Sigma70_r2
protein.
ACCESSION LR593886-273
PROTEIN_ID VTR90972.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_67420"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DP00|L0DP00_SINAD ;
ALN/Q_length_ratio=0.966 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7049 PE=4 SV=1 ; EVALUE=4e-54 ;
Q/S_length_ratio=1.020"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DGF0|L0DGF0_SINAD ;
ALN/Q_length_ratio=0.927 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3619 PE=4 SV=1 ; EVALUE=4e-53 ;
Q/S_length_ratio=1.005"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A0A090KN41|A0A090KN41_9BACT ;
ALN/Q_length_ratio=0.980 ; DESCRIPTION=Uncultured
bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1 ; EVALUE=2e-51 ;
Q/S_length_ratio=1.020"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DHE8|L0DHE8_SINAD ;
ALN/Q_length_ratio=0.941 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4015 PE=4 SV=1 ; EVALUE=2e-47 ;
Q/S_length_ratio=1.035"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DLS6|L0DLS6_SINAD ;
ALN/Q_length_ratio=0.859 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6097 PE=4 SV=1 ; EVALUE=1e-38 ;
Q/S_length_ratio=0.928"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|D5ST62|D5ST62_PLAL2 ;
ALN/Q_length_ratio=0.922 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Planctomyces limnophilus
(strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290)
GN=Plim_0986 PE=4 SV=1 ; EVALUE=6e-23 ;
Q/S_length_ratio=1.015"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DJB5|L0DJB5_SINAD ;
ALN/Q_length_ratio=0.937 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4755 PE=4 SV=1 ; EVALUE=2e-22 ;
Q/S_length_ratio=0.986"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DF65|L0DF65_SINAD ;
ALN/Q_length_ratio=0.863 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3223 PE=4 SV=1 ; EVALUE=2e-21 ;
Q/S_length_ratio=0.962"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M2AYP9|M2AYP9_9PLAN ;
ALN/Q_length_ratio=0.976 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
europaea 6C GN=RE6C_01458 PE=4 SV=1 ; EVALUE=8e-21 ;
Q/S_length_ratio=1.010"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|K5DPI1|K5DPI1_RHOBT ;
ALN/Q_length_ratio=0.912 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
baltica SH28 GN=RBSH_00257 PE=4 SV=1 ; EVALUE=1e-20 ;
Q/S_length_ratio=1.020"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L7CA22|L7CA22_RHOBT ;
ALN/Q_length_ratio=0.912 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
baltica SWK14 GN=RBSWK_05023 PE=4 SV=1 ; EVALUE=2e-20 ;
Q/S_length_ratio=1.020"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|K5CED8|K5CED8_RHOBT ;
ALN/Q_length_ratio=0.941 ; DESCRIPTION=ECF sigma factor
OS=Rhodopirellula baltica SH28 GN=RBSH_02471 PE=4 SV=1 ;
EVALUE=3e-20 ; Q/S_length_ratio=0.972"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|F2AZ43|F2AZ43_RHOBT ;
ALN/Q_length_ratio=0.941 ; DESCRIPTION=ECF sigma factor
OS=Rhodopirellula baltica WH47 GN=RBWH47_02300 PE=4 SV=1 ;
EVALUE=3e-20 ; Q/S_length_ratio=0.972"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|Q7UFH2|Q7UFH2_RHOBA ;
ALN/Q_length_ratio=0.941 ; DESCRIPTION=Probable ECF sigma
factor OS=Rhodopirellula baltica (strain SH1) GN=sigW PE=4
SV=1 ; EVALUE=4e-20 ; Q/S_length_ratio=0.972"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|Q7UEM7|Q7UEM7_RHOBA ;
ALN/Q_length_ratio=0.922 ; DESCRIPTION=Probable
extracytoplasmic function alternative sigma factor
OS=Rhodopirellula baltica (strain SH1) GN=sigE PE=4 SV=1 ;
EVALUE=7e-20 ; Q/S_length_ratio=1.020"
/note="Pfam_scan:hit_1 (30..100);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:64; HMM_Length:71;
EVALUE:7.6e-09; BITSCORE: 35.0"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MGADSADTTR VTLLHRLNQD PADQISWGEF FRLYSPAIRS WLMHWGLQEA DAQDVSQNVL
61 MRLTQKLPQF KYDATRSFRG WLKTLTHHAW HDFVTEAGYR TRGSGDTSIF NQLQSIEARE
121 DLAARVEATF DKELLEMALL RARERVAEGT WMAFKLAALD GVAPQTVADQ LGVRVSHVYL
181 AKHRVQKLVQ EEIKAIESPG ASSAS
//